PolyAnionic Delivery of Nucleic Acids

26-08-2021 дата публикации
Номер:
US20210261502A1
Принадлежит:
Контакты:
Номер заявки: 40-26-1717
Дата заявки: 10-02-2021

CROSS-REFERENCE TO RELATED APPLICATIONS

[0001]

The present application claims benefit of U.S. Provisional Application No. 62/468,244, filed Mar. 7, 2017, which is hereby incorporated by reference in its entirety.

BACKGROUND

[0002]

Delivery of nucleic acids has been explored extensively as a potential therapeutic option for certain disease states. In particular, RNA interference (RNAi) has been the subject of significant research and clinical development. While RNAi, such as short interfering RNA (siRNA), may have therapeutic potential, it is of little use in treating diseases involving deficiency of one or more proteins. Messenger RNA (mRNA) therapy has become an increasingly important option for treatment of various diseases, in particular, for those associated with deficiency of one or more proteins.

SUMMARY

[0003]

The present invention provides, among other things, lipids useful in enhancing the release of mRNA. The invention is based, in part, on the surprising discovery that the dendritic anionic lipids (DALs) described herein provide safe and targeted mRNA delivery. In particular, the DALs of the present invention can provide delivery of nucleic acids, e.g., mRNA, that is more targeted, e.g., to the liver, compared to non-targeted methods. The targeted delivery of mRNA provided by the DALs described herein can reduce administration frequency, improve patient tolerability, and provide more potent and less toxic mRNA therapy for the treatment of a variety of diseases, including but not limited to cancer, cardiovascular, cystic fibrosis, infectious, and neurological diseases.

[0004]

In some embodiments, the present invention provides a dendritic anionic lipid (DAL) of Formula (I):

[0000]

  • wherein:
  • each of R and R1 independently comprise one or more non-polar groups selected from cholesterol, optionally substituted C8-C26 aliphatic or optionally substituted C8-C26 acyl;
  • L is —X—, —X—R2—X— or —X—R2—R2c—R2—X—, wherein:
    • each instance of R2 independently is optionally substituted C1-C10 aliphatic;
    • each instance of X independently is —O—, —C(O)—, —S(O)2—, —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —N(R3)—C(O)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O—, —N(R3)—C(O)—N(R3)—, —SS—, or —S;
    • each instance of R3 independently is —H or CIA alkyl;
    • R2c is a polyethylene glycol linker having a weight average molecular weight of from 350 Da to 45 kDa;
  • Dm is a dendritic moiety of m generations, comprising
    • 2m-1 molecular units of formula

[0000]

[0000]

and

    • 2m molecular units of formula

[0000]

    • m is an integer from 1 to 6;
    • in each generation independently, one of j and k is 1 and the other is 0 or 1; and
    • A is —OH or a pharmaceutically acceptable anion.

[0018]

In some aspects, the present invention provides methods of preparing the DALs of Formula (I).

[0019]

In some aspects, the present invention provides a composition such as a pharmaceutical composition (a “provided composition”) comprising a DAL of the present invention and one or more polynucleotides.

[0020]

In embodiments, a composition comprises an mRNA encoding a protein, encapsulated within a liposome, wherein the liposome comprises one or more cationic lipids, one or more non-cationic lipids, one or more cholesterol-based lipids and one or more PEG-modified lipids, wherein at least one non-cationic lipid is a DAL such as those described herein. In embodiments, a composition comprises an mRNA encoding for cystic fibrosis transmembrane conductance regulator (CFTR) protein. In embodiments, a composition comprises an mRNA encoding for ornithine transcarbamylase (OTC) protein.

[0021]

In embodiments, a composition comprises a nucleic acid encapsulated within a liposome, wherein the liposome comprises a DAL as described herein. In embodiments, a composition further comprises one more lipids selected from the group consisting of one or more cationic lipids, one or more non-cationic lipids, and one or more PEG-modified lipids. In embodiments, a nucleic acid is an mRNA encoding a peptide or polypeptide. In embodiments, an mRNA encodes a peptide or polypeptide for use in the delivery to or treatment of the lung of a subject or a lung cell (e.g., an mRNA encodes cystic fibrosis transmembrane conductance regulator (CFTR) protein). In embodiments, an mRNA encodes a peptide or polypeptide for use in the delivery to or treatment of the liver of a subject or a liver cell (e.g., an mRNA encodes ornithine transcarbamylase (OTC) protein).

[0022]

In some aspects, the present invention provides methods of treating a disease in a subject comprising administering to the subject a provided composition.

DETAILED DESCRIPTION OF CERTAIN EMBODIMENTS

Definitions

[0023]

In order for the present invention to be more readily understood, certain terms are first defined below. Additional definitions for the following terms and other terms are set forth throughout the specification. The publications and other reference materials referenced herein to describe the background of the invention and to provide additional detail regarding its practice are hereby incorporated by reference.

[0024]

Amino acid: As used herein, the term “amino acid,” in its broadest sense, refers to any compound and/or substance that can be incorporated into a polypeptide chain. In some embodiments, an amino acid has the general structure H2N—C(H)(R)—COOH. In some embodiments, an amino acid is a naturally occurring amino acid. In some embodiments, an amino acid is a synthetic amino acid; in some embodiments, an amino acid is a d-amino acid; in some embodiments, an amino acid is an I-amino acid. “Standard amino acid” refers to any of the twenty standard I-amino acids commonly found in naturally occurring peptides. “Nonstandard amino acid” refers to any amino acid, other than the standard amino acids, regardless of whether it is prepared synthetically or obtained from a natural source. As used herein, “synthetic amino acid” encompasses chemically modified amino acids, including but not limited to salts, amino acid derivatives (such as amides), and/or substitutions. Amino acids, including carboxy- and/or amino-terminal amino acids in peptides, can be modified by methylation, amidation, acetylation, protecting groups, and/or substitution with other chemical groups that can change the peptide's circulating half-life without adversely affecting their activity. Amino acids may participate in a disulfide bond. Amino acids may comprise one or posttranslational modifications, such as association with one or more chemical entities (e.g., methyl groups, acetate groups, acetyl groups, phosphate groups, formyl moieties, isoprenoid groups, sulfate groups, polyethylene glycol moieties, lipid moieties, carbohydrate moieties, biotin moieties, etc.). The term “amino acid” is used interchangeably with “amino acid residue,” and may refer to a free amino acid and/or to an amino acid residue of a peptide. It will be apparent from the context in which the term is used whether it refers to a free amino acid or a residue of a peptide.

[0025]

Animal: As used herein, the term “animal” refers to any member of the animal kingdom. In some embodiments, “animal” refers to humans, at any stage of development. In some embodiments, “animal” refers to non-human animals, at any stage of development. In certain embodiments, the non-human animal is a mammal (e.g., a rodent, a mouse, a rat, a rabbit, a monkey, a dog, a cat, a sheep, cattle, a primate, and/or a pig). In some embodiments, animals include, but are not limited to, mammals, birds, reptiles, amphibians, fish, insects, and/or worms. In some embodiments, an animal may be a transgenic animal, genetically-engineered animal, and/or a clone.

[0026]

Approximately or about: As used herein, the term “approximately” or “about,” as applied to one or more values of interest, refers to a value that is similar to a stated reference value. In certain embodiments, the term “approximately” or “about” refers to a range of values that fall within 25%, 20%, 19%, 18%, 17%, 16%, 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1%, or less in either direction (greater than or less than) of the stated reference value unless otherwise stated or otherwise evident from the context (except where such number would exceed 100% of a possible value).

[0027]

Biologically active: As used herein, the term “biologically active” refers to a characteristic of any agent that has activity in a biological system, and particularly in an organism. For instance, an agent that, when administered to an organism, has a biological effect on that organism, is considered to be biologically active.

[0028]

Delivery: As used herein, the term “delivery” encompasses both local and systemic delivery. For example, delivery of mRNA encompasses situations in which an mRNA is delivered to a target tissue and the encoded protein is expressed and retained within the target tissue (also referred to as “local distribution” or “local delivery”), and situations in which an mRNA is delivered to a target tissue and the encoded protein is expressed and secreted into patient's circulation system (e.g., serum) and systematically distributed and taken up by other tissues (also referred to as “systemic distribution” or “systemic delivery”).

[0029]

Expression: As used herein, “expression” of a nucleic acid sequence refers to translation of an mRNA into a polypeptide, assemble multiple polypeptides into an intact protein (e.g., enzyme) and/or post-translational modification of a polypeptide or fully assembled protein (e.g., enzyme). In this application, the terms “expression” and “production,” and grammatical equivalent, are used inter-changeably.

[0030]

Functional: As used herein, a “functional” biological molecule is a biological molecule in a form in which it exhibits a property and/or activity by which it is characterized.

[0031]

Half-life: As used herein, the term “half-life” is the time required for a quantity such as nucleic acid or protein concentration or activity to fall to half of its value as measured at the beginning of a time period.

[0032]

Improve, increase, or reduce: As used herein, the terms “improve,” “increase” or “reduce,” or grammatical equivalents, indicate values that are relative to a baseline measurement, such as a measurement in the same individual prior to initiation of the treatment described herein, or a measurement in a control subject (or multiple control subject) in the absence of the treatment described herein. A “control subject” is a subject afflicted with the same form of disease as the subject being treated, who is about the same age as the subject being treated.

[0033]

In Vitro: As used herein, the term “in vitro” refers to events that occur in an artificial environment, e.g., in a test tube or reaction vessel, in cell culture, etc., rather than within a multi-cellular organism.

[0034]

In Vivo: As used herein, the term “in vivo” refers to events that occur within a multi-cellular organism, such as a human and a non-human animal. In the context of cell-based systems, the term may be used to refer to events that occur within a living cell (as opposed to, for example, in vitro systems).

[0035]

Isolated: As used herein, the term “isolated” refers to a substance and/or entity that has been (1) separated from at least some of the components with which it was associated when initially produced (whether in nature and/or in an experimental setting), and/or (2) produced, prepared, and/or manufactured by the hand of man. Isolated substances and/or entities may be separated from about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or more than about 99% of the other components with which they were initially associated. In some embodiments, isolated agents are about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99%, or more than about 99% pure. As used herein, a substance is “pure” if it is substantially free of other components. As used herein, calculation of percent purity of isolated substances and/or entities should not include excipients (e.g., buffer, solvent, water, etc.).

[0036]

messenger RNA (mRNA): As used herein, the term “messenger RNA (mRNA)” or “mRNA” refers to a polynucleotide that encodes at least one polypeptide. mRNA as used herein encompasses both modified and unmodified RNA. The term “modified mRNA” related to mRNA comprising at least one chemically modified nucleotide. mRNA may contain one or more coding and non-coding regions. mRNA can be purified from natural sources, produced using recombinant expression systems and optionally purified, chemically synthesized, etc. Where appropriate, e.g., in the case of chemically synthesized molecules, mRNA can comprise nucleoside analogs such as analogs having chemically modified bases or sugars, backbone modifications, etc. An mRNA sequence is presented in the 5′ to 3′ direction unless otherwise indicated. In some embodiments, an mRNA is or comprises natural nucleosides (e.g., adenosine, guanosine, cytidine, uridine); nucleoside analogs (e.g., 2-aminoadenosine, 2-thiothymidine, inosine, pyrrolo-pyrimidine, 3-methyl adenosine, 5-methylcytidine, C-5 propynyl-cytidine, C-5 propynyl-uridine, 2-aminoadenosine, C5-bromouridine, C5-fluorouridine, C5-iodouridine, C5-propynyl-uridine, C5-propynyl-cytidine, C5-methylcytidine, 2-aminoadenosine, 7-deazaadenosine, 7-deazaguanosine, 8-oxoadenosine, 8-oxoguanosine, 0(6)-methylguanine, and 2-thiocytidine); chemically modified bases; biologically modified bases (e.g., methylated bases); intercalated bases; modified sugars (e.g., 2′-fluororibose, ribose, 2′-deoxyribose, arabinose, and hexose); and/or modified phosphate groups (e.g., phosphorothioates and 5′-N-phosphoramidite linkages).

[0037]

Nucleic acid: As used herein, the term “nucleic acid,” in its broadest sense, refers to any compound and/or substance that is or can be incorporated into a polynucleotide chain. In some embodiments, a nucleic acid is a compound and/or substance that is or can be incorporated into a polynucleotide chain via a phosphodiester linkage. In some embodiments, “nucleic acid” refers to individual nucleic acid residues (e.g., nucleotides and/or nucleosides). In some embodiments, “nucleic acid” refers to a polynucleotide chain comprising individual nucleic acid residues. In some embodiments, “nucleic acid” encompasses RNA as well as single and/or double-stranded DNA and/or cDNA. In some embodiments, “nucleic acid” encompasses ribonucleic acids (RNA), including but not limited to any one or more of interference RNAs (RNAi), small interfering RNA (siRNA), short hairpin RNA (shRNA), antisense RNA (aRNA), messenger RNA (mRNA), modified messenger RNA (mmRNA), long non-coding RNA (IncRNA), micro-RNA (miRNA) multimeric coding nucleic acid (MCNA), polymeric coding nucleic acid (PCNA), guide RNA (gRNA) and CRISPR RNA (crRNA). In some embodiments, “nucleic acid” encompasses deoxyribonucleic acid (DNA), including but not limited to any one or more of single-stranded DNA (ssDNA), double-stranded DNA (dsDNA) and complementary DNA (cDNA). In some embodiments, “nucleic acid” encompasses both RNA and DNA. In embodiments, DNA may be in the form of antisense DNA, plasmid DNA, parts of a plasmid DNA, pre-condensed DNA, a product of a polymerase chain reaction (PCR), vectors (e.g., P1, PAC, BAC, YAC, artificial chromosomes), expression cassettes, chimeric sequences, chromosomal DNA, or derivatives of these groups. In embodiments, RNA may be in the form of messenger RNA (mRNA), ribosomal RNA (rRNA), signal recognition particle RNA (7 SL RNA or SRP RNA), transfer RNA (tRNA), transfer-messenger RNA (tmRNA), small nuclear RNA (snRNA), small nucleolar RNA (snoRNA), SmY RNA, small Cajal body-specific RNA (scaRNA), guide RNA (gRNA), ribonuclease P (RNase P), Y RNA, telomerase RNA component (TERC), spliced leader RNA (SL RNA), antisense RNA (aRNA or asRNA), cis-natural antisense transcript (cis-NAT), CRISPR RNA (crRNA), long noncoding RNA (IncRNA), micro-RNA (miRNA), piwi-interacting RNA (piRNA), small interfering RNA (siRNA), transacting siRNA (tasiRNA), repeat associated siRNA (rasiRNA), 73K RNA, retrotransposons, a viral genome, a viroid, satellite RNA, or derivatives of these groups. In some embodiments, a nucleic acid is a mRNA encoding a protein such as an enzyme.

[0038]

Patient: As used herein, the term “patient” or “subject” refers to any organism to which a provided composition may be administered, e.g., for experimental, diagnostic, prophylactic, cosmetic, and/or therapeutic purposes. Typical patients include animals (e.g., mammals such as mice, rats, rabbits, non-human primates, and/or humans). In some embodiments, a patient is a human. A human includes pre- and post-natal forms.

[0039]

Pharmaceutically acceptable: The term “pharmaceutically acceptable”, as used herein, refers to substances that, within the scope of sound medical judgment, are suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.

[0040]

Pharmaceutically acceptable salt: Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al., describes pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences (1977) 66:1-19. Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate, phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like. Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N+(C1-4 alkyl)4 salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium. quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, sulfonate and aryl sulfonate. Further pharmaceutically acceptable salts include salts formed from the quarternization of an amine using an appropriate electrophile, e.g., an alkyl halide, to form a quarternized alkylated amino salt.

[0041]

Systemic distribution or delivery: As used herein, the terms “systemic distribution,” “systemic delivery,” or grammatical equivalent, refer to a delivery or distribution mechanism or approach that affect the entire body or an entire organism. Typically, systemic distribution or delivery is accomplished via body's circulation system, e.g., blood stream. Compared to the definition of “local distribution or delivery.”

[0042]

Subject: As used herein, the term “subject” refers to a human or any non-human animal (e.g., mouse, rat, rabbit, dog, cat, cattle, swine, sheep, horse or primate). A human includes pre- and post-natal forms. In many embodiments, a subject is a human being. A subject can be a patient, which refers to a human presenting to a medical provider for diagnosis or treatment of a disease. The term “subject” is used herein interchangeably with “individual” or “patient.” A subject can be afflicted with or is susceptible to a disease or disorder but may or may not display symptoms of the disease or disorder.

[0043]

Substantially: As used herein, the term “substantially” refers to the qualitative condition of exhibiting total or near-total extent or degree of a characteristic or property of interest. One of ordinary skill in the biological arts will understand that biological and chemical phenomena rarely, if ever, go to completion and/or proceed to completeness or achieve or avoid an absolute result. The term “substantially” is therefore used herein to capture the potential lack of completeness inherent in many biological and chemical phenomena.

[0044]

Target tissues: As used herein, the term “target tissues” refers to any tissue that is affected by a disease to be treated. In some embodiments, target tissues include those tissues that display disease-associated pathology, symptom, or feature.

[0045]

Therapeutically effective amount: As used herein, the term “therapeutically effective amount” of a therapeutic agent means an amount that is sufficient, when administered to a subject suffering from or susceptible to a disease, disorder, and/or condition, to treat, diagnose, prevent, and/or delay the onset of the symptom(s) of the disease, disorder, and/or condition. It will be appreciated by those of ordinary skill in the art that a therapeutically effective amount is typically administered via a dosing regimen comprising at least one unit dose.

[0046]

Treating: As used herein, the term “treat,” “treatment,” or “treating” refers to any method used to partially or completely alleviate, ameliorate, relieve, inhibit, prevent, delay onset of, reduce severity of and/or reduce incidence of one or more symptoms or features of a particular disease, disorder, and/or condition. Treatment may be administered to a subject who does not exhibit signs of a disease and/or exhibits only early signs of the disease for the purpose of decreasing the risk of developing pathology associated with the disease.

[0047]

Aliphatic: As used herein, the term aliphatic refers to C1-C40 hydrocarbons and includes both saturated and unsaturated hydrocarbons. An aliphatic may be linear, branched, or cyclic. For example, C1-C20 aliphatics can include C1-C20 alkyls (e.g., linear or branched C1-C20 saturated alkyls), C2-C20 alkenyls (e.g., linear or branched C4-C20 dienyls, linear or branched C6-C20 trienyls, and the like), and C2-C20 alkynyls (e.g., linear or branched C2-C20 alkynyls). C1-C20 aliphatics can include C3-C20 cyclic aliphatics (e.g., C3-C20 cycloalkyls, C4-C20 cycloalkenyls, or C8-C20 cycloalkynyls). In certain embodiments, the aliphatic may comprise one or more cyclic aliphatic and/or one or more heteroatoms such as oxygen, nitrogen, or sulfur and may optionally be substituted with one or more substituents such as alkyl, halo, alkoxyl, hydroxy, amino, aryl, ether, ester or amide. An aliphatic group is unsubstituted or substituted with one or more substituent groups as described herein. For example, an aliphatic may be substituted with one or more (e.g., 1, 2, 3, 4, 5, or 6 independently selected substituents) of halogen, —CO2R′, —CN, —OH, —OR′, —NH2, —NHR′, —N(R′)2, —SR′ or-SO2R′, wherein each instance of R′ independently is C1-C3 alkyl. In embodiments, the aliphatic is unsubstituted. In embodiments, the aliphatic does not include any heteroatoms.

[0048]

Alkyl: As used herein, the term “alkyl” means acyclic linear and branched hydrocarbon groups, e.g. “C1-C20 alkyl” refers to alkyl groups having 1-20 carbons. An alkyl group may be linear or branched. Examples of alkyl groups include, but are not limited to, methyl, ethyl, n-propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl, pentyl, isopentyl tert-pentylhexyl, Isohexyletc. Other alkyl groups will be readily apparent to those of skill in the art given the benefit of the present disclosure. An alkyl group may be unsubstituted or substituted with one or more substituent groups as described herein. For example, an alkyl group may be substituted with one or more (e.g., 1, 2, 3, 4, 5, or 6 independently selected substituents) of halogen, —CO2R′, —CN, —OH, —OR′, —NH2, —NHR′, —N(R′)2, —SR′ or-SO2R′, wherein each instance of R′ independently is C1-C3 alkyl. In embodiments, the alkyl is unsubstituted. In embodiments, the alkyl is substituted (e.g., with 1, 2, 3, 4, 5, or 6 substituent groups as described herein).

[0049]

Alkylene: The term “alkylene,” as used herein, represents a saturated divalent straight or branched chain hydrocarbon group and is exemplified by methylene, ethylene, isopropylene and the like. In certain embodiments, the aliphatic may comprise one or more cyclic aliphatic and/or one or more heteroatoms such as oxygen, nitrogen, or sulfur and may optionally be substituted with one or more substituents such as alkyl, halo, alkoxyl, hydroxy, amino, aryl, ether, ester or amide. For example, an aliphatic may be substituted with one or more (e.g., 1, 2, 3, 4, 5, or 6 independently selected substituents) of halogen, —CO2R′, —CN, —OH, —OR′, —NH2, —NHR′, —N(R′)2, —SR′ or-SO2R′, wherein each instance of R′ independently is C1-3 alkyl. In certain embodiments, the aliphatic is unsubstituted. In certain embodiments, the aliphatic does not include any heteroatoms.

[0050]

Alkenyl: As used herein, “alkenyl” means any linear or branched hydrocarbon chains having one or more unsaturated carbon-carbon double bonds that may occur in any stable point along the chain, e.g. “C2-C20 alkenyl” refers to an alkenyl group having 2-20 carbons. For example, an alkenyl group includes prop-2-enyl, but-2-enyl, but-3-enyl, 2-methylprop-2-enyl, hex-2-enyl, hex-5-enyl, 2,3-dimethylbut-2-enyl, and the like. In embodiments, the alkenyl comprises 1, 2, or 3 carbon-carbon double bond. In embodiments, the alkenyl comprises a single carbon-carbon double bond. In embodiments, multiple double bonds (e.g., 2 or 3) are conjugated. An alkenyl group may be unsubstituted or substituted with one or more substituent groups as described herein. For example, an alkenyl group may be substituted with one or more (e.g., 1, 2, 3, 4, 5, or 6 independently selected substituents) of halogen,—CO2R′, —CN, —OH, —OR′, —NH2, —NHR′, —N(R′)2, —SR′ or-SO2R′, wherein each instance of R′ independently is C1-C3 alkyl. In embodiments, the alkenyl is unsubstituted. In embodiments, the alkenyl is substituted (e.g., with 1, 2, 3, 4, 5, or 6 substituent groups as described herein).

[0051]

Alkynyl: As used herein, “alkynyl” means any hydrocarbon chain of either linear or branched configuration, having one or more carbon-carbon triple bonds occurring in any stable point along the chain, e.g. “C2-C20 alkynyl” refers to an alkynyl group having 2-20 carbons. Examples of an alkynyl group include prop-2-ynyl, but-2-ynyl, but-3-ynyl, pent-2-ynyl, 3-methylpent-4-ynyl, hex-2-ynyl, hex-5-ynyl, etc. In embodiments, an alkynyl comprises one carbon-carbon triple bond. An alkynyl group may be unsubstituted or substituted with one or more substituent groups as described herein. For example, an alkynyl group may be substituted with one or more (e.g., 1, 2, 3, 4, 5, or 6 independently selected substituents) of halogen,—CO2R′, —CN, —OH, —OR′, —NH2, —NHR′, —N(R′)2, —SR′ or-SO2R′, wherein each instance of R′ independently is C1-C3 alkyl. In embodiments, the alkynyl is unsubstituted. In embodiments, the alkynyl is substituted (e.g., with 1, 2, 3, 4, 5, or 6 substituent groups as described herein).

[0052]

Cycloalkyl: As used herein, the term “cycloalkyl” means a nonaromatic, saturated, cyclic group, e.g. “C3-C10 cycloalkyl.” In embodiments, a cycloalkyl is monocyclic. In embodiments, a cycloalkyl is polycyclic (e.g., bicyclic or tricyclic). In polycyclic cycloalkyl groups, individual rings can be fused, bridged, or spirocyclic. Examples of a cycloalkyl group include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, norbornanyl, bicyclo[3.2.1]octanyl, octahydro-pentalenyl, and spiro[4.5]decanyl, and the like. The term “cycloalkyl” may be used interchangeably with the term “carbocycle”. A cycloalkyl group may be unsubstituted or substituted with one or more substituent groups as described herein. For example, a cycloalkyl group may be substituted with one or more (e.g., 1, 2, 3, 4, 5, or 6 independently selected substituents) of halogen, —CO2R′, —CN, —OH, —OR′, —NH2, —NHR′, —N(R′)2, —SR′ or-SO2R′, wherein each instance of R′ independently is C1-C3 alkyl. In embodiments, the cycloalkyl is unsubstituted. In embodiments, the cycloalkyl is substituted (e.g., with 1, 2, 3, 4, 5, or 6 substituent groups as described herein).

[0053]

Halogen: As used herein, the term “halogen” means fluorine, chlorine, bromine, or iodine.

Dendritic Anionic Lipids

[0054]

In some embodiments, the present invention provides a dendritic anionic lipid (DAL) of Formula (I):

[0000]

    • wherein:
    • each of R and R1 independently comprise one or more non-polar groups selected from cholesterol, optionally substituted C8-C26 aliphatic and optionally substituted C8-C26 acyl;
    • L is —X—, —X—R2—X— or —X—R2c—R2—X—, wherein:
      • each instance of R2 independently is optionally substituted C1-C10 aliphatic;
      • each instance of X independently is —O—, —C(O)—, —S(O)2—, —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —N(R3)—C(O)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O—, —N(R3)—C(O)—N(R3)—, —SS—, or —S;
      • each instance of R3 independently is —H or CIA alkyl;
      • R2c is a polyethylene glycol linker having a weight average molecular weight of from 350 Da to 45 kDa;
    • Dm is a dendritic moiety of m generations, comprising
    • 2m-1 molecular units of formula

[0000]

[0000]

and

    • 2m molecular units of formula

[0000]

    • m is an integer from 1 to 6;
    • in each generation independently, one of j and k is 1 and the other is 0 or 1; and
    • A is —OH or a pharmaceutically acceptable anion.

[0068]

In embodiments described herein, a variable “X” may also be described as variable “Xz” where z is a positive integer (e.g., 1, 2, 3, 4, or 5) in order to clearly identify certain embodiments. Thus, in embodiments, X is X1, X2, X3, X4, or X5 as described herein.

[0069]

Other embodiments of variables can be described in a similar manner in order to clearly identify certain embodiments. For example, in some embodiments, variable “R2” may also be described as variable R2a, R2b, or R2d (e.g., R2 is R2a, R2b, or R2d) in order to identify certain embodiments.

[0070]

When A is described as a pharmaceutically acceptable anion, the intended meaning is that a suitable counterion is present, e.g., in solid form, but in solution (e.g., at physiological pH) may not be associated as closely with the anionic charge. Any physiologically acceptable counterion, e.g. Na+, is suitable for use.

[0071]

In some embodiments, R is C8-26 alkyl. In some embodiments, R is a straight-chain C8-26 alkyl.

[0072]

In some embodiments, R is CH3(CH2)6CH2—, CH3(CH2)7CH2—, CH3(CH2)8CH2—, CH3(CH2)9CH2—, CH3(CH2)10CH2—, CH3(CH2)11CH2—, CH3(CH2)12CH2—, CH3(CH2)13CH2—, CH3(CH2)14CH2—, CH3(CH2)1sCH2—, CH3(CH2)16CH2—, CH3(CH2)17CH2 CH3(CH2)18CH2—, CH3(CH2)19CH2—, CH3(CH2)20CH2—, CH3(CH2)21CH2—, CH3(CH2)22CH2—, CH3(CH2)23CH2— or CH3(CH2)24CH2—.

[0073]

In some embodiments, R is CH3(CH2)13CH2—, CH3(CH2)14CH2—, CH3(CH2)15CH2—, CH3(CH2)16CH2—, CH3(CH2)17CH2— or CH3(CH2)18CH2—.

[0074]

In some embodiments, R is CH3(CH2)14CH2—, CH3(CH2)15CH2— or CH3(CH2)16CH2—.

[0075]

In some embodiments, R is C8-26 aliphatic having one or two carbon-carbon double bonds.

[0076]

In some embodiments, R is cis-CH3(CH2)3CH═CH(CH2)7CH2—, cis-CH3(CH2)5CH═CH(CH2)7CH2—, cis-CH3(CH2)8CH═CH(CH2)4CH2—, cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)3CH═CH(CH2)2CH2—, cis-CH3(CH2)7CH═CH(CH2)3CH2—, trans-CH3(CH2)7CH═CH(CH2)2CH2—, trans-CH3(CH2)5CH═CH(CH2)3CH2—, cis-CH3(CH2)3CH═CH(CH2)7CH2—, cis-CH3(CH2)7CH═CH(CH2)11CH2—, cis-CH3(CH2)7CH═CH(CH2)13CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)2CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)3CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)11CH2—.

[0077]

In some embodiments, R is cis-CH3(CH2)3CH═CH(CH2)7CH2—, cis-CH3(CH2)5CH═CH(CH2)7CH2—, cis-CH3(CH2)8CH═CH(CH2)4CH2−; cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—; trans-CH3(CH2)7CH═CH(CH2)7CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)3CH2—.

[0078]

In some embodiments, R is cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)3CH═CH(CH2)7CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)3CH2—.

[0079]

In some embodiments, R is cis-CH3(CH2),CH═CH(CH2),CH2— or cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)7CH2—.

[0080]

In some embodiments, R is C8-26 aliphatic having three, four, five or six carbon-carbon double bonds.

[0081]

In some embodiments, R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—, cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—, cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH2CH═CH(CH2)3CH2—, trans,trans,trans-CH3(CH2)7CH═CHCH2CH═CHCH2CH═CH(CH2)3CH2—, cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CH(CH2)6CH2—, cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)9CH2—, cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—, cis,cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)3CH2—, cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)6CH2—, cis,cis,trans,trans,cis-CH3(CH2)4CH═CHCH═CHCH═CHCH═CHCH2CH═CH(CH2)3CH2—, cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)3CH2—, cis,cis,cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)2CH2—, cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)5CH2—, cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—, cis,cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)2CH2—, cis, cis, cis, cis, cis, cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—.

[0082]

In some embodiments, R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—, cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—, cis,cis,trans,trans,cis-CH3(CH2)4CH═CHCH═CHCH═CHCH═CHCH2CH═CH(CH2)3CH2—, cis,cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)2CH2—.

[0083]

In some embodiments, R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2— or cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—.

[0084]

In some embodiments, R1 is C8-26 alkyl. In some embodiments, R1 is a straight-chain C8-26 alkyl.

[0085]

In some embodiments, R1 is CH3(CH2)6CH2—, CH3(CH2)7CH2—, CH3(CH2)8CH2—, CH3(CH2)9CH2—, CH3(CH2)10CH2—, CH3(CH2)11CH2—, CH3(CH2)12CH2—, CH3(CH2)13CH2—, CH3(CH2)14CH2—, CH3(CH2)15CH2—, CH3(CH2)16CH2—, CH3(CH2)17CH2—, CH3(CH2)18CH2—, CH3(CH2)19CH2—, CH3(CH2)20CH2—, CH3(CH2)21CH2—, CH3(CH2)22CH2—, CH3(CH2)23CH2— or CH3(CH2)24CH2—.

[0086]

In some embodiments, R1 is CH3(CH2)13CH2—, CH3(CH2)14CH2—, CH3(CH2)15CH2—, CH3(CH2)16CH2—, CH3(CH2)17CH2— or CH3(CH2)18CH2—.

[0087]

In some embodiments, R1 is CH3(CH2)14CH2—, CH3(CH2)15CH2— or CH3(CH2)16CH2—.

[0088]

In some embodiments, R1 is C8-26 aliphatic having one or two carbon-carbon double bonds.

[0089]

In some embodiments, R1 is cis-CH3(CH2)3CH═CH(CH2)7CH2—, cis-CH3(CH2)5CH═CH(CH2)7CH2—, cis-CH3(CH2)8CH═CH(CH2)4CH2—, cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—, cis-CH3(CH2)7CH═CH(CH2)9CH2—, trans-CH3(CH2)7CH═CH(CH2)7CH2—, trans-CH3(CH2)5CH═CH(CH2)9CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—, cis-CH3(CH2)7CH═CH(CH2)11CH2—, cis-CH3(CH2)7CH═CH(CH2)13CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)9CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)11CH2—.

[0090]

In some embodiments, R1 is cis-CH3(CH2)3CH═CH(CH2)7CH2—, cis-CH3(CH2)5CH═CH(CH2)7CH2—, cis-CH3(CH2)8CH═CH(CH2)4CH2—, cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—, trans-CH3(CH2)7CH═CH(CH2)7CH2, cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)9CH2—.

[0091]

In some embodiments, R1 is cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—, cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)9CH2—.

[0092]

In some embodiments, R1 is cis-CH3(CH2)7CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2—.

[0093]

In some embodiments, R1 is C8-26 aliphatic having three, four, five or six carbon-carbon double bonds.

[0094]

In some embodiments, R1 is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—, cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—, cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH2CH═CH(CH2)3CH2—, trans,trans,trans-CH3(CH2)7CH═CHCH2CH═CHCH2CH═CH(CH2)3CH2—, cis,cis,cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CH(CH2)6CH2—, cis, cis, cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)9CH2—, cis, cis, cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—, cis, cis, cis, cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)3CH2—, cis, cis, cis, cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)6CH2—, cis, cis, trans, trans, cis-CH3(CH2)4CH═CHCH═CHCH═CHCH═CHCH2CH═CH(CH2)3CH2—, cis, cis, cis, cis, cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)3CH2—, cis, cis, cis, cis, cis-CH3(CH2)4CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)2CH2—, cis, cis, cis, cis, cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)5CH2—, cis, cis, cis, cis, cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—, cis, cis, cis, cis, cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)2CH2—, or cis,cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—.

[0095]

In some embodiments, R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—, cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—, cis,cis,trans,trans,cis-CH3(CH2)4CH═CHCH═CHCH═CHCH═CHCH2CH═CH(CH2)3CH2—, or cis,cis,cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)2CH2—.

[0096]

In some embodiments, R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2— or cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—.

[0097]

In some embodiments,

  • R is CH3(CH2)14CH2—, CH3(CH2)15CH2— or CH3(CH2)16CH2—; and
  • R1 is CH3(CH2)14CH2—, CH3(CH2)15CH2— or CH3(CH2)16CH2—.

[0100]

In some embodiments,

  • R is cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—, cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)7CH2-or cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)9CH2—; and
  • R1 is cis-CH3(CH2)7CH═CH(CH2)7CH2—, cis-CH3(CH2)9CH═CH(CH2)7CH2—, cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)9CH2—.

[0103]

In some embodiments,

  • R is cis-CH3(CH2)7CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)7CH2—; and
  • R1 is cis-CH3(CH2)7CH═CH(CH2)7CH2— or cis,cis-CH3(CH2)4CH═CH—CH2CH═CH(CH2)7CH2—.

[0106]

In some embodiments,

  • R is cis-CH3(CH2)7CH═CH(CH2)7CH2—; and
  • R1 is cis-CH3(CH2)7CH═CH(CH2)7CH2—.

[0109]

In some embodiments,

  • R is cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2—; and
  • R1 is cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2—.

[0112]

In some embodiments,

  • R is cis-CH3(CH2)7CH═CH(CH2)7CH2—; and
  • R1 is cis,cis-CH3(CH2)4CH═CHCH2CH═CH(CH2)7CH2—.

[0115]

In some embodiments,

  • R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2— or cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—; and
  • R1 is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2— or cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—.

[0118]

In some embodiments,

  • R is cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CH(CH2)7CH2—; and
  • R1 is cis,cis,cis,cis-CH3CH2CH═CHCH2CH═CHCH2CH═CHCH2CH═CH(CH2)4CH2—.

[0121]

In some embodiments, each of R and R1 independently is C8-C26 acyl, by which is meant R′—C(O)— wherein R′ is any of the embodiments described herein for R and R1, respectively.

[0122]

In some embodiments, each of R and R1 independently is an aliphatic chain of a saturated or unsaturated fatty acid, i.e., R′—(CH2)— for a fatty acid R′—C(O)—. In some embodiments, each of R and R1 independently is the aliphatic chain of caprylic, pelargonic, capric, undecylic, lauric, tridecyclic, myristic, pentadecylic, margaric, stearic, nonadecylic, arachidic, heneicosylic, behenic, triosylic, lignoceric, oleic, linoleic, pentacosylic or cerotic acid. In some embodiments, each of R and R1 is the aliphatic chain of caprylic, pelargonic, capric, undecylic, lauric, tridecyclic, myristic, pentadecylic, or margaric acid. In some embodiments, each of R and R1 is the aliphatic chain of lauric, tridecyclic, myristic, or pentadecylic acid. In some embodiments, each of R and R1 is the aliphatic chain of lauric or myristic acid. In some embodiments, each of R and R1 is the aliphatic chain of stearic, nonadecylic, arachidic, heneicosylic, behenic, triosylic, lignoceric, oleic, linoleic, pentacosylic or cerotic acid. In some embodiments, each of R and R1 is the aliphatic chain of lignoceric, oleic, linoleic, pentacosylic or cerotic acid. In some embodiments, each of R and R1 is the aliphatic chain of oleic, linoleic or pentacosylic acid. In some embodiments, each of R and R1 is the aliphatic chain of oleic or linoleic acid. In some embodiments, each of R and R is the aliphatic chain of oleic acid. In some embodiments, each of R and R1 is the aliphatic chain of linoleic acid. In some embodiments R is the aliphatic chain of oleic acid and R is the aliphatic chain of linoleic acid.

[0123]

In some embodiments, Dm is D1:

[0000]

[0000]

wherein one of j1 and k1 is 1 and the other is 0 or 1.

[0124]

In some embodiments, j1 is 0 and k1 is 1. In some embodiments, j1 is 1 and k1 is 0.

[0125]

In some embodiments, Dm is D2:

[0000]

[0000]

wherein:
one of j1 and k1 is 1 and the other is 0 or 1; and
one of j2 and k2 is 1 and the other is 0 or 1.

[0126]

In some embodiments,

[0000]

one of j1 and k1 is 1 and the other is 0; and
one of j2 and k2 is 1 and the other is 0.

[0127]

In some embodiments,

[0000]

j1 is 0 and k1 is 1; and
j2 is 0 and k2 is 1.

[0128]

In some embodiments, Dm is D3:

[0000]

[0000]

wherein:
each Z3 is

[0000]

[0000]

one of j1 and k1 is 1 and the other is 0 or 1;
one of j2 and k2 is 1 and the other is 0 or 1; and
one of j3 and k3 is 1 and the other is 0 or 1.

[0129]

In some embodiments,

[0000]

one of j1 and k1 is 1 and the other is 0;
one of j2 and k2 is 1 and the other is 0; and
one of j3 and k3 is 1 and the other is 0.

[0130]

In some embodiments,

[0131]

j1 is 0 and k1 is 1;

[0132]

j2 is 0 and k2 is 1; and

[0133]

j3 is 1 and k3 is 0.

[0134]

In some embodiments, Dm is D4:

[0000]

[0135]

wherein each Z4 is:

[0000]

[0000]

one of j1 and k1 is 1 and the other is 0 or 1;
one of j2 and k2 is 1 and the other is 0 or 1;
one of j3 and k3 is 1 and the other is 0 or 1; and
one of j4 and k4 is 1 and the other is 0 or 1.

[0136]

In some embodiments,

[0000]

one of j1 and k1 is 1 and the other is 0;
one of j2 and k2 is 1 and the other is 0;
one of j3 and k3 is 1 and the other is 0; and
one of j4 and k4 is 1 and the other is 0.

[0137]

In some embodiments,

[0000]

j1 is 0 and k1 is 1;
j2 is 0 and k2 is 1;
j3 is 1 and k3 is 0; and
j4 is 1 and k4 is 0.

[0138]

In some embodiments, Dm is D5:

[0000]

[0139]

wherein each Z5 is:

[0000]

[0000]

each Z5′ is

[0000]

[0000]

one of j1 and k1 is 1 and the other is 0 or 1;
one of j2 and k2 is 1 and the other is 0 or 1;
one of j3 and k3 is 1 and the other is 0 or 1;
one of j4 and k4 is 1 and the other is 0 or 1; and
one of j5 and k5 is 1 and the other is 0 or 1.

[0140]

In some embodiments,

[0000]

one of j1 and k1 is 1 and the other is 0;
one of j2 and k2 is 1 and the other is 0;
one of j3 and k3 is 1 and the other is 0;
one of j4 and k4 is 1 and the other is 0; and
one of j5 and k5 is 1 and the other is 0.

[0141]

In some embodiments,

[0000]

j1 is 0 and k1 is 1;
j2 is 0 and k2 is 1;
j3 is 1 and k3 is 0;
j4 is 1 and k4 is 0; and
j5 is 1 and k5 is 0.

[0142]

In some embodiments, Dm is D6:

[0000]

[0143]

wherein each Z6 is:

[0000]

[0000]

each Z6′ is

[0000]

[0000]

one of j1 and k1 is 1 and the other is 0 or 1;
one of j2 and k2 is 1 and the other is 0 or 1;
one of j3 and k3 is 1 and the other is 0 or 1;
one of j4 and k4 is 1 and the other is 0 or 1;
one of j5 and k5 is 1 and the other is 0 or 1; and
one of j6 and k6 is 1 and the other is 0 or 1.

[0144]

In some embodiments,

[0000]

one of j1 and k1 is 1 and the other is 0;
one of j2 and k2 is 1 and the other is 0;
one of j3 and k3 is 1 and the other is 0;
one of j4 and k4 is 1 and the other is 0;
one of j5 and k5 is 1 and the other is 0; and
one of j6 and k6 is 1 and the other is 0.

[0145]

In some embodiments,

[0000]

j1 is 0 and k1 is 1;
j2 is 0 and k2 is 1;
j3 is 1 and k3 is 0;
j4 is 1 and k4 is 0;
j5 is 1 and k5 is 0; and
j6 is 1 and k6 is 0.

[0146]

In some embodiments, A is —OH. In some embodiments, A is a pharmaceutically acceptable anion. In some embodiments, A is —OSO3, —ONO2 or —OPO3. In some embodiments, A is —OSO3.

[0147]

In some embodiments, L is —X—. In some embodiments, L is —X—R2—X—. In some embodiments, L is —X—R2—R2—R2—X—.

[0148]

In some embodiments, the present invention provides a DAL of Formula (II):

[0000]

[0000]

wherein:

  • X1 is —O—, —C(O)—, —S(O)2—, —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —N(R3)—C(O)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O—, —N(R3)—C(O)—N(R3)—, —SS—, or —S;
  • each instance of R3 independently is —H or C1-4 alkyl; and
  • each of R, R1 and Dm is as defined above for formula (I), both singly and in combination.

[0152]

In some embodiments, X1 is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X1 is —O—C(O)—N(R3)— or —N(R3)—C(O)—N(R3)—. In some embodiments, X1 is —C(O)—N(R3)—.

[0153]

In some embodiments, X1 is —C(O)—NH—, —NH—C(O)—, —O—C(O)—NH—, —NH—C(O)—O—, —NH—C(O)—NH—, —SS—, or —S.

[0154]

In some embodiments, R3 is —H, —CH3, Et, Pr,iPr, Bu, sec-butyl,iBu, ortBu. In some embodiments, R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, R3 is —H or —CH3. In some embodiments, R3 is —H.

[0155]

In some embodiments, X1 is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, X1 is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H or —CH3. In some embodiments, X1 is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H.

[0156]

In some embodiments, X1 is —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, X1 is —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H or —CH3. In some embodiments, X1 is —O—C(O)—N(R3)— or —N(R3)—C(O)—O—; and R3 is —H or —CH3. In some embodiments, X1 is —O—C(O)—N(R3)— or —N(R3)—C(O)—O—; and R3 is —H.

[0157]

In some embodiments, the present invention provides a DAL of Formula (III):

[0000]

[0000]

wherein:

  • each of X2 and X3 independently is —O—, —C(O)—, —S(O)2—, —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —N(R3)—C(O)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O—, —N(R3)—C(O)—N(R3)—, —SS—, or —S; each instance of R3 independently is —H or C1-4 alkyl; and
  • R2 is C10 aliphatic;
  • each of R, R1 and Dm is as defined above for formula (I), both singly and in combination.

[0161]

In some embodiments, X2 is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X2 is —O—C(O)—N(R3)— or N(R3)—C(O)—N(R3)—. In some embodiments, X2 is —O—C(O)—N(R3)—.

[0162]

In some embodiments, X3 is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X3 is —O—C(O)—N(R3)— or N(R3)—C(O)—N(R3)—. In some embodiments, X3 is —C(O)—N(R3)—.

[0163]

In some embodiments, R3 is —H, —CH3, Et, Pr,iPr, Bu, sec-butyl,iBu, ortBu. In some embodiments, R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, R3 is —H or —CH3. In some embodiments, R3 is —H.

[0164]

In some embodiments, each of X2 and X3 independently is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)13, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, each of X2 and X3 independently is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H or —CH3. In some embodiments, each of X2 and X3 independently is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H.

[0165]

In some embodiments, each of X2 and X3 independently is —C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, each of X2 and X3 independently is —C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H or —CH3. In some embodiments, each of X2 and X3 independently is —O—C(O)—N(R3)— or —N(R3)—C(O)—O—; and R3 is —H or —CH3. In some embodiments, each of X2 and X3 independently is —O—C(O)—N(R3)— or —N(R3)—C(O)—O—; and R3 is —H.

[0166]

In some embodiments, R2 is —CH2—, —CH2CH2—, —(CH2)3—, —(CH2)4—, —(CH2)5—, —(CH2)6—, —(CH2)7—, —(CH2)8—, —(CH2)9— or —(CH2)10—. In some embodiments, R2 is —CH2—, —CH2CH2—, —(CH2)3—, —(CH2)4-or —(CH2)5—. In some embodiments, R2a is —(CH2)6—, —(CH2)7—, —(CH2)8—, —(CH2)9— or —(CH2)10—. In some embodiments, R2a is —(CH2)3—, —(CH2)4—, —(CH2)5—, —(CH2)6—, —(CH2)7— or —(CH2)8—. In some embodiments, R2a is —CH2—, —CH2CH2— or —(CH2)3—. In some embodiments, R2a is —(CH2)4—, —(CH2)5— or —(CH2)6—. In some embodiments, R2a is —(CH2)7—, —(CH2)8— or —(CH2)9—.

[0167]

In some embodiments, the present invention provides a DAL of Formula (IV):

[0000]

[0000]

wherein:

  • each of X4 and X5 independently is —O—, —C(O)—, —S(O)2—, —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —N(R3)—C(O)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O—, —N(R3)—C(O)—N(R3)—, —SS—, or —S; each instance of R3 independently is —H or C1-4 alkyl;
  • each of R2b and R2d independently is C1-4 aliphatic;
  • R2 is a polyethylene glycol linker having a weight average molecular weight of from 350 Da to 45 kDa; and
  • each of R, R1 and D, is as defined above for formula (I), both singly and in combination.

[0172]

The polyethylene glycol linker R2c has the structure —(OCH2CH2)n—O—, wherein n is an integer with an average value from 8 to 1000. In some embodiments, the average value of n is from 8 to 10. In some embodiments, the average value of n is from 20 to 25. In some embodiments, the average value of n is from 40 to 50. In some embodiments, the average value of n is from 100 to 125. In some embodiments, the average value of n is from 200 to 250. In some embodiments, the average value of n is from 400 to 500. In some embodiments, the average value of n is from 800 to 1000.

[0173]

In some embodiments, R2c is a polyethylene glycol (“PEG”) linker having a weight average molecular weight (Mw) of from 350 Da to 800 Da. In some embodiments, R2c is a PEG linker having MW of from 800 Da to 1200 Da. In some embodiments, R2c is a PEG linker having MW of from 1.8 kDa to 2.2 kDa. In some embodiments, R2c is a PEG linker having MW of from 4.5 kDa to 5.5 kDa. In some embodiments, R2c is a PEG linker having MW of from 9 kDa to 11 kDa. In some embodiments, R2c is a PEG linker having MW of from 18 kDa to 22 kDa. In some embodiments, R2c is a PEG linker having MW of from 36 kDa to 44 kDa.

[0174]

In some embodiments, X4 is —C(O)—O—, —O—C(O)— N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X4 is —O—C(O)—N(R3)— or N(R3)—C(O)—N(R3)—. In some embodiments, X4 is —C(O)—N(R3)—.

[0175]

In some embodiments, X5 is —C(O)—O—, —C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X5 is —O—C(O)—N(R3)— or N(R3)—C(O)—N(R3)—. In some embodiments, X5 is —O—C(O)—N(R3)—.

[0176]

In some embodiments, R3 is —H, —CH3, Et, Pr,iPr, Bu, sec-butyl,iBu, ortBu. In some embodiments, R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, R3 is —H or —CH3. In some embodiments, R3 is —H.

[0177]

In some embodiments, each of X4 and X5 independently is —C(O)—O—, —C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, each of X4 and X5 independently is —C(O)—O—, —C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)C(O O-or-N(R3)—C(O)—N(R3)—; and R3 is —H or —CH3. In some embodiments, each of X4 and X5 independently is —C(O)—O—, —O—C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H.

[0178]

In some embodiments, each of X4 and X5 independently is —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H, —CH3, Et, Pr, or Bu. In some embodiments, each of X4 and X5 independently is —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and R3 is —H or —CH3. In some embodiments, each of X4 and X5 independently is —O—C(O)—N(R3)— or —N(R3)—C(O)—O—; and R3 is —H or —CH3. In some embodiments, each of X4 and X5 independently is —O—C(O)—N(R3) or —N(R3)—C(O)—O—; and R3 is —H.

[0179]

In some embodiments, X4 is —C(O)—O—, —C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and X5 is —C(O)—O—, —C(O)—, —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X4 is —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—; and X5 is —C(O)—N(R3)—, —O—C(O)—N(R3)—, —N(R3)—C(O)—O— or —N(R3)—C(O)—N(R3)—. In some embodiments, X4 is —O—C(O)—NH— or —NH—C(O)—; and X5 is —C(O)—N(R3)— or —O—C(O)—N(R3)—. In some embodiments, X4 is —O—C(O)—NH— and X5 is —C(O)—NH—.

[0180]

In some embodiments, each of R2b and R2d independently is —CH2—, —CH2CH2—, —(CH2)3—, —(CH2)4—, —(CH2)5—, —(CH2)6—, —(CH2)7—, —(CH2)8—, —(CH2)9— or —(CH2)10—. In some embodiments, each of R2b and R2d independently is —CH2—, —CH2CH2—, —(CH2)3—, —(CH2)4— or —(CH2)5—. In some embodiments, each of R2b and R2d independently is is —(CH2)6—, —(CH2)7—, —(CH2)—, —(CH2)9— or —(CH2)10—. In some embodiments, each of R2b and R2d independently is —(CH2)3—, —(CH2)4—, —(CH2)5—, —(CH2)6—, —(CH2)7— or —(CH2)—. In some embodiments, each of R2b and R2d independently is —CH2—, —CH2CH2— or —(CH2)3—. In some embodiments, each of R2b and R2d independently is —(CH2)4—, —(CH2)5— or —(CH2)6—. In some embodiments, each of R2b and R2d independently is —(CH2)7—, —(CH2)8— or —(CH2)9—.

[0181]

Some examples of DALs of the present invention are shown below in Table 1.

[0000]

[0182]

In some embodiments, the targeting group of a polymer is a moiety that may interact with a biological target of interest via a biological binding event, i.e., between complementary pairs of biological molecules. For example, a targeting group may comprise an entity such as biotin that specifically binds to a complementary entity, such as avidin or streptavidin. Other examples of interactions that occur between pairs of biological molecules including proteins, nucleic acids, glycoproteins, carbohydrates, hormones, and the like. Specific examples include an antibody/peptide pair, an antibody/antigen pair, an antibody fragment/antigen pair, an antibody/antigen fragment pair, an antibody fragment/antigen fragment pair, an antibody/hapten pair, an enzyme/substrate pair, an enzyme/inhibitor pair, an enzyme/cofactor pair, a protein/substrate pair, a nucleic acid/nucleic acid pair, a protein/nucleic acid pair, a peptide/peptide pair, a protein/protein pair, a small molecule/protein pair, a glutathione/GST pair, an anti-GFP/GFP fusion protein pair, a Myc/Max pair, a maltose/maltose binding protein pair, a carbohydrate/protein pair, a carbohydrate derivative/protein pair, a metal binding tag/metal/chelate, a peptide tag/metal ion-metal chelate pair, a peptide/NT A pair, a lectin/carbohydrate pair, a receptor/hormone pair, a receptor/effector pair, a complementary nucleic acid/nucleic acid pair, a ligand/cell surface receptor pair, a virus/ligand pair, a Protein A/antibody pair, a Protein G/antibody pair, a Protein L/antibody pair, an Fe receptor/antibody pair, a biotin/avidin pair, a biotin/streptavidin pair, a drug/target pair, a zinc finger/nucleic acid pair, a small molecule/peptide pair, a small molecule/protein pair, a small molecule/target pair, a carbohydrate/protein pair such as maltose/MBP (maltose binding protein), a small molecule/target pair, or a metal ion/chelating agent pair.

[0183]

In some embodiments, the inclusion of a, S-acyl-2-thioethyl (SATE) protecting group is employed. Such a protecting group is readily cleavable through esterase enzymatic activity resulting in a liberated phosphate functional group (Scheme 1). Upon cleavage of the SATE group, the generation of a negatively charged phosphate moiety is realized. The resulting negative charge can counter-balance the cationic charge of the amino monomer moiety resulting in a zwitterionic region. Upon release of some SATE protecting groups, the polymer is partially neutralized, rendering its ability to bind nucleic acids diminished. Thus, partial release of the nucleic acid payload will occur. Upon release of all SATE protecting groups, the polymer is completely neutralized, rendering its ability to bind nucleic acids removed. Thus, full release of the nucleic acid payload will occur. In total, such a polymer allows for facile complexation with nucleic acids, efficient release of payload and biodegradability of itself.

[0184]

As noted above, the DALs of the present invention are anionic lipids that can provide delivery of nucleic acids, e.g., mRNA, that is more targeted, e.g., to the liver, compared to non-targeted methods. Some anions, such as sulfate, have been shown to bind to various organic anion transport proteins (OATPs). See, e.g., M. Roth et al., OATPs, OATs and OCTs: the organic anion and cation transporters of the SLCO and SLC22A gene superfamilies, British Journal of Pharmacology, 2012, 165:1260-1287. Thus, delivery vehicles capable of delivering nucleic acids, e.g., liposomal delivery vehicles capable of delivering mRNA, that comprise one or more DALs of the present invention can provide a more targeted delivery of nucleic acids.

Nucleic Acids

[0185]

Synthesis of Nucleic Acids

[0186]

Nucleic acids according to the present invention may be synthesized according to any known methods. For example, mRNAs according to the present invention may be synthesized via in vitro transcription (IVT). Briefly, IVT is typically performed with a linear or circular DNA template containing a promoter, a pool of ribonucleotide triphosphates, a buffer system that may include DTT and magnesium ions, and an appropriate RNA polymerase (e.g., T3, T7, mutated T7 or SP6 RNA polymerase), DNAse I, pyrophosphatase, and/or RNAse inhibitor. The exact conditions will vary according to the specific application.

[0187]

In some embodiments, for the preparation of mRNA according to the invention, a DNA template is transcribed in vitro. A suitable DNA template typically has a promoter, for example a T3, T7, mutated T7 or SP6 promoter, for in vitro transcription, followed by desired nucleotide sequence for desired mRNA and a termination signal.

[0188]

Desired mRNA sequence(s) according to the invention may be determined and incorporated into a DNA template using standard methods. For example, starting from a desired amino acid sequence (e.g., an enzyme sequence), a virtual reverse translation is carried out based on the degenerated genetic code. Optimization algorithms may then be used for selection of suitable codons. Typically, the G/C content can be optimized to achieve the highest possible G/C content on one hand, taking into the best possible account the frequency of the tRNAs according to codon usage on the other hand. The optimized RNA sequence can be established and displayed, for example, with the aid of an appropriate display device and compared with the original (wild-type) sequence. A secondary structure can also be analyzed to calculate stabilizing and destabilizing properties or, respectively, regions of the RNA.

[0189]

As described above, the term “nucleic acid,” in its broadest sense, refers to any compound and/or substance that is or can be incorporated into a polynucleotide chain. DNA may be in the form of antisense DNA, plasmid DNA, parts of a plasmid DNA, pre-condensed DNA, a product of a polymerase chain reaction (PCR), vectors (e.g., P1, PAC, BAC, YAC, artificial chromosomes), expression cassettes, chimeric sequences, chromosomal DNA, or derivatives of these groups. RNA may be in the form of messenger RNA (mRNA), ribosomal RNA (rRNA), signal recognition particle RNA (7 SL RNA or SRP RNA), transfer RNA (tRNA), transfer-messenger RNA (tmRNA), small nuclear RNA (snRNA), small nucleolar RNA (snoRNA), SmY RNA, small Cajal body-specific RNA (scaRNA), guide RNA (gRNA), ribonuclease P (RNase P), Y RNA, telomerase RNA component (TERC), spliced leader RNA (SL RNA), antisense RNA (aRNA or asRNA), cis-natural antisense transcript (cis-NAT), CRISPR RNA (crRNA), long noncoding RNA (IncRNA), microRNA (miRNA), piwi-interacting RNA (piRNA), small interfering RNA (siRNA), transacting siRNA (tasiRNA), repeat associated siRNA (rasiRNA), 73K RNA, retrotransposons, a viral genome, a viroid, satellite RNA, or derivatives of these groups. In some embodiments, a nucleic acid is a mRNA encoding a protein.

[0190]

Synthesis of mRNA

[0191]

mRNAs according to the present invention may be synthesized according to any of a variety of known methods. For example, mRNAs according to the present invention may be synthesized via in vitro transcription (IVT). Briefly, IVT is typically performed with a linear or circular DNA template containing a promoter, a pool of ribonucleotide triphosphates, a buffer system that may include DTT and magnesium ions, and an appropriate RNA polymerase (e.g., T3, T7 or SP6 RNA polymerase), DNAse I, pyrophosphatase, and/or RNAse inhibitor. The exact conditions will vary according to the specific application. The exact conditions will vary according to the specific application. The presence of these reagents is undesirable in the final product according to several embodiments and may thus be referred to as impurities and a preparation containing one or more of these impurities may be referred to as an impure preparation. In some embodiments, the in vitro transcribing occurs in a single batch.

[0192]

In some embodiments, for the preparation of mRNA according to the invention, a DNA template is transcribed in vitro. A suitable DNA template typically has a promoter, for example a T3, T7 or SP6 promoter, for in vitro transcription, followed by desired nucleotide sequence for desired mRNA and a termination signal.

[0193]

Desired mRNA sequence(s) according to the invention may be determined and incorporated into a DNA template using standard methods. For example, starting from a desired amino acid sequence (e.g., an enzyme sequence), a virtual reverse translation is carried out based on the degenerated genetic code. Optimization algorithms may then be used for selection of suitable codons. Typically, the G/C content can be optimized to achieve the highest possible G/C content on one hand, taking into the best possible account the frequency of the tRNAs according to codon usage on the other hand. The optimized RNA sequence can be established and displayed, for example, with the aid of an appropriate display device and compared with the original (wild-type) sequence. A secondary structure can also be analyzed to calculate stabilizing and destabilizing properties or, respectively, regions of the RNA.

[0194]

Modified mRNA

[0195]

In some embodiments, mRNA according to the present invention may be synthesized as unmodified or modified mRNA. Modified mRNA comprises nucleotide modifications in the RNA. A modified mRNA according to the invention can thus include nucleotide modification that are, for example, backbone modifications, sugar modifications or base modifications. In some embodiments, mRNAs may be synthesized from naturally occurring nucleotides and/or nucleotide analogues (modified nucleotides) including, but not limited to, purines (adenine (A), guanine (G)) or pyrimidines (thymine (T), cytosine (C), uracil (U)), and as modified nucleotides analogues or derivatives of purines and pyrimidines, such as e.g. 1-methyl-adenine, 2-methyl-adenine, 2-methylthio-N-6-isopentenyl-adenine, N6-methyl-adenine, N6-isopentenyl-adenine, 2-thio-cytosine, 3-methyl-cytosine, 4-acetyl-cytosine, 5-methyl-cytosine, 2,6-diaminopurine, 1-methyl-guanine, 2-methyl-guanine, 2,2-dimethyl-guanine, 7-methyl-guanine, inosine, 1-methyl-inosine, pseudouracil (5-uracil), dihydro-uracil, 2-thio-uracil, 4-thio-uracil, 5-carboxymethylaminomethyl-2-thio-uracil, 5-(carboxyhydroxymethyl)-uracil, 5-fluoro-uracil, 5-bromo-uracil, 5-carboxymethylaminomethyl-uracil, 5-methyl-2-thio-uracil, 5-methyl-uracil, N-uracil-5-oxyacetic acid methyl ester, 5-methylaminomethyl-uracil, 5-methoxyaminomethyl-2-thio-uracil, 5′-methoxycarbonylmethyl-uracil, 5-methoxy-uracil, uracil-5-oxyacetic acid methyl ester, uracil-5-oxyacetic acid (v), 1-methyl-pseudouracil, queosine, .beta.-D-mannosyl-queosine, wybutoxosine, and phosphoramidates, phosphorothioates, peptide nucleotides, methylphosphonates, 7-deazaguanosine, 5-methylcytosine and inosine. The preparation of such analogues is known to a person skilled in the art e.g., from the U.S. Pat. Nos. 4,373,071, 4,401,796, 4,415,732, 4,458,066, 4,500,707, 4,668,777, 4,973,679, 5,047,524, 5,132,418, 5,153,319, 5,262,530 and 5,700,642, the disclosures of which are incorporated by reference in their entirety.

[0196]

In some embodiments, mRNAs may contain RNA backbone modifications. Typically, a backbone modification is a modification in which the phosphates of the backbone of the nucleotides contained in the RNA are modified chemically. Exemplary backbone modifications typically include, but are not limited to, modifications from the group consisting of methylphosphonates, methylphosphoramidates, phosphoramidates, phosphorothioates (e.g. cytidine 5′-O-(1-thiophosphate)), boranophosphates, positively charged guanidinium groups etc., which means by replacing the phosphodiester linkage by other anionic, cationic or neutral groups.

[0197]

In some embodiments, mRNAs may contain sugar modifications. A typical sugar modification is a chemical modification of the sugar of the nucleotides it contains including, but not limited to, sugar modifications chosen from the group consisting of 4′-thio-ribonucleotide (see, e.g., US Patent Application Publication No. US 2016/0031928, incorporated by reference herein), 2′-deoxy-2′-fluoro-oligoribonucleotide (2′-fluoro-2′-deoxycytidine 5′-triphosphate, 2′-fluoro-2′-deoxyuridine 5′-triphosphate), 2′-deoxy-2′-deamine-oligoribonucleotide (2′-amino-2′-deoxycytidine 5′-triphosphate, 2′-amino-2′-deoxyuridine 5′-triphosphate), 2′-O-alkyloligoribonucleotide, 2′-deoxy-2′-C-alkyloligoribonucleotide (2′-O-methylcytidine 5′-triphosphate, 2′-methyluridine 5′-triphosphate), 2′-C-alkyloligoribonucleotide, and isomers thereof (2′-aracytidine 5′-triphosphate, 2′-arauridine 5′-triphosphate), or azidotriphosphates (2′-azido-2′-deoxycytidine 5′-triphosphate, 2′-azido-2′-deoxyuridine 5′-triphosphate).

[0198]

In some embodiments, mRNAs may contain modifications of the bases of the nucleotides (base modifications). A modified nucleotide which contains a base modification is also called a base-modified nucleotide. Examples of such base-modified nucleotides include, but are not limited to, 2-amino-6-chloropurine riboside 5′-triphosphate, 2-aminoadenosine 5′-triphosphate, 2-thiocytidine 5′-triphosphate, 2-thiouridine 5′-triphosphate, 4-thiouridine 5′-triphosphate, 5-aminoallylcytidine 5′-triphosphate, 5-aminoallyluridine 5′-triphosphate, 5-bromocytidine 5′-triphosphate, 5-bromouridine 5′-triphosphate, 5-iodocytidine 5′-triphosphate, 5-iodouridine 5′-triphosphate, 5-methylcytidine 5′-triphosphate, 5-methyluridine 5′-triphosphate, 6-azacytidine 5′-triphosphate, 6-azauridine 5′-triphosphate, 6-chloropurine riboside 5′-triphosphate, 7-deazaadenosine 5′-triphosphate, 7-deazaguanosine 5′-triphosphate, 8-azaadenosine 5′-triphosphate, 8-azidoadenosine 5′-triphosphate, benzimidazole riboside 5′-triphosphate, N1-methyladenosine 5′-triphosphate, N1-methylguanosine 5′-triphosphate, N6-methyladenosine 5′-triphosphate, 06-methylguanosine 5′-triphosphate, pseudouridine 5′-triphosphate, puromycin 5′-triphosphate or xanthosine 5′-triphosphate.

[0199]

Typically, mRNA synthesis includes the addition of a “cap” on the N-terminal (5′) end, and a “tail” on the C-terminal (3′) end. The presence of the cap is important in providing resistance to nucleases found in most eukaryotic cells. The presence of a “tail” serves to protect the mRNA from exonuclease degradation.

[0200]

Thus, in some embodiments, mRNAs include a 5′ cap structure. A 5′ cap is typically added as follows: first, an RNA terminal phosphatase removes one of the terminal phosphate groups from the 5′ nucleotide, leaving two terminal phosphates; guanosine triphosphate (GTP) is then added to the terminal phosphates via a guanylyl transferase, producing a 5′5′5 triphosphate linkage; and the 7-nitrogen of guanine is then methylated by a methyltransferase. Examples of cap structures include, but are not limited to, m7G(5′)ppp (5′(A,G(5′)ppp(5′)A and G(5′)ppp(5′)G.

[0201]

In some embodiments, mRNAs include a 3′ poly(A) tail structure. A poly-A tail on the 3′ terminus of mRNA typically includes about 10 to 300 adenosine nucleotides (e.g., about 10 to 200 adenosine nucleotides, about 10 to 150 adenosine nucleotides, about 10 to 100 adenosine nucleotides, about 20 to 70 adenosine nucleotides, or about 20 to 60 adenosine nucleotides). In some embodiments, mRNAs include a 3′ poly(C) tail structure. A suitable poly-C tail on the 3′ terminus of mRNA typically include about 10 to 200 cytosine nucleotides (e.g., about 10 to 150 cytosine nucleotides, about 10 to 100 cytosine nucleotides, about 20 to 70 cytosine nucleotides, about 20 to 60 cytosine nucleotides, or about 10 to 40 cytosine nucleotides). The poly-C tail may be added to the poly-A tail or may substitute the poly-A tail.

[0202]

In some embodiments, mRNAs include a 5′ and/or 3′ untranslated region. In some embodiments, a 5′ untranslated region includes one or more elements that affect an mRNA's stability or translation, for example, an iron responsive element. In some embodiments, a 5′ untranslated region may be between about 50 and 500 nucleotides in length.

[0203]

In some embodiments, a 3′ untranslated region includes one or more of a polyadenylation signal, a binding site for proteins that affect an mRNA's stability of location in a cell, or one or more binding sites for miRNAs. In some embodiments, a 3′ untranslated region may be between 50 and 500 nucleotides in length or longer.

[0204]

Cap Structure

[0205]

In some embodiments, mRNAs include a 5′ cap structure. A 5′ cap is typically added as follows: first, an RNA terminal phosphatase removes one of the terminal phosphate groups from the 5′ nucleotide, leaving two terminal phosphates; guanosine triphosphate (GTP) is then added to the terminal phosphates via a guanylyl transferase, producing a 5′5′5 triphosphate linkage; and the 7-nitrogen of guanine is then methylated by a methyltransferase. Examples of cap structures include, but are not limited to, m7G(5′)ppp (5′(A,G(5′)ppp(5′)A and G(5′)ppp(5′)G.

[0206]

Naturally occurring cap structures comprise a 7-methyl guanosine that is linked via a triphosphate bridge to the 5′-end of the first transcribed nucleotide, resulting in a dinucleotide cap of m7G(5′)ppp(5′)N, where N is any nucleoside. In vivo, the cap is added enzymatically. The cap is added in the nucleus and is catalyzed by the enzyme guanylyl transferase. The addition of the cap to the 5′ terminal end of RNA occurs immediately after initiation of transcription. The terminal nucleoside is typically a guanosine, and is in the reverse orientation to all the other nucleotides, i.e., G(5′)ppp(5′)GpNpNp.

[0207]

A common cap for mRNA produced by in vitro transcription is m7G(5′)ppp(5′)G, which has been used as the dinucleotide cap in transcription with T7 or SP6 RNA polymerase in vitro to obtain RNAs having a cap structure in their 5′-termini. The prevailing method for the in vitro synthesis of caPPEd mRNA employs a pre-formed dinucleotide of the form m7G(5′)ppp(5′)G (“m7GpppG”) as an initiator of transcription.

[0208]

To date, a usual form of a synthetic dinucleotide cap used in in vitro translation experiments is the Anti-Reverse Cap Analog (“ARCA”) or modified ARCA, which is generally a modified cap analog in which the 2′ or 3′ OH group is replaced with —OCH3.

[0209]

Additional cap analogs include, but are not limited to, a chemical structures selected from the group consisting of m7GpppG, m7GpppA, m7GpppC; unmethylated cap analogs (e.g., GpppG); dimethylated cap analog (e.g., m2,7GpppG), trimethylated cap analog (e.g., m227GpppG), dimethylated symmetrical cap analogs (e.g., m7Gpppm7G), or anti reverse cap analogs (e.g., ARCA; m7,2′OmeGpppG, m72′dGpppG, m7,3′OmeGpppG, m7,3′dGpppG and their tetraphosphate derivatives) (see, e.g., Jemielity, J. et al., “Novel ‘anti-reverse’ cap analogs with superior translational properties”, RNA, 9: 1108-1122 (2003)).

[0210]

In some embodiments, a suitable cap is a 7-methyl guanylate (“m7G”) linked via a triphosphate bridge to the 5′-end of the first transcribed nucleotide, resulting in m7G(5′)ppp(5′)N, where N is any nucleoside. A preferred embodiment of a m7G cap utilized in embodiments of the invention is m7G(5′)ppp(5′)G.

[0211]

In some embodiments, the cap is a Cap0 structure. Cap0 structures lack a 2′-O-methyl residue of the ribose attached to bases 1 and 2. In some embodiments, the cap is a Cap1 structure. Cap1 structures have a 2′-O-methyl residue at base 2. In some embodiments, the cap is a Cap2 structure. Cap2 structures have a 2′-O-methyl residue attached to both bases 2 and 3.

[0212]

A variety of m7G cap analogs are known in the art, many of which are commercially available. These include the m7GpppG described above, as well as the ARCA 3′-OCH3 and 2′-OCH3 cap analogs (Jemielity, J. et al., RNA, 9: 1108-1122 (2003)). Additional cap analogs for use in embodiments of the invention include N7-benzylated dinucleoside tetraphosphate analogs (described in Grudzien, E. et al., RNA, 10: 1479-1487 (2004)), phosphorothioate cap analogs (described in Grudzien-Nogalska, E., et al., RNA, 13: 1745-1755 (2007)), and cap analogs (including biotinylated cap analogs) described in U.S. Pat. Nos. 8,093,367 and 8,304,529, incorporated by reference herein.

[0213]

Tail Structure

[0214]

Typically, the presence of a “tail” serves to protect the mRNA from exonuclease degradation.

[0215]

The poly A tail is thought to stabilize natural messengers and synthetic sense RNA. Therefore, in certain embodiments a long poly A tail can be added to an mRNA molecule thus rendering the RNA more stable. Poly A tails can be added using a variety of art-recognized techniques. For example, long poly A tails can be added to synthetic or in vitro transcribed RNA using poly A polymerase (Yokoe, et al. Nature Biotechnology. 1996; 14: 1252-1256). A transcription vector can also encode long poly A tails. In addition, poly A tails can be added by transcription directly from PCR products. Poly A may also be ligated to the 3′ end of a sense RNA with RNA ligase (see, e.g., Molecular Cloning A Laboratory Manual, 2nd Ed., ed. by Sambrook, Fritsch and Maniatis (Cold Spring Harbor Laboratory Press: 1991 edition)).

[0216]

In some embodiments, mRNAs include a 3′ poly(A) tail structure. Typically, the length of the poly A tail can be at least about 10, 50, 100, 200, 300, 400 at least 500 nucleotides. In some embodiments, a poly-A tail on the 3′ terminus of mRNA typically includes about 10 to 300 adenosine nucleotides (e.g., about 10 to 200 adenosine nucleotides, about 10 to 150 adenosine nucleotides, about 10 to 100 adenosine nucleotides, about 20 to 70 adenosine nucleotides, or about 20 to 60 adenosine nucleotides). In some embodiments, mRNAs include a 3′ poly(C) tail structure. A suitable poly-C tail on the 3′ terminus of mRNA typically include about 10 to 200 cytosine nucleotides (e.g., about 10 to 150 cytosine nucleotides, about 10 to 100 cytosine nucleotides, about 20 to 70 cytosine nucleotides, about 20 to 60 cytosine nucleotides, or about 10 to 40 cytosine nucleotides). The poly-C tail may be added to the poly-A tail or may substitute the poly-A tail.

[0217]

In some embodiments, the length of the poly A or poly C tail is adjusted to control the stability of a modified sense mRNA molecule of the invention and, thus, the transcription of protein. For example, since the length of the poly A tail can influence the half-life of a sense mRNA molecule, the length of the poly A tail can be adjusted to modify the level of resistance of the mRNA to nucleases and thereby control the time course of polynucleotide expression and/or polypeptide production in a target cell.

[0218]

5′ and 3′ Untranslated Region

[0219]

In some embodiments, mRNAs include a 5′ and/or 3′ untranslated region. In some embodiments, a 5′ untranslated region includes one or more elements that affect an mRNA's stability or translation, for example, an iron responsive element. In some embodiments, a 5′ untranslated region may be between about 50 and 500 nucleotides in length.

[0220]

In some embodiments, a 3′ untranslated region includes one or more of a polyadenylation signal, a binding site for proteins that affect an mRNA's stability of location in a cell, or one or more binding sites for miRNAs. In some embodiments, a 3′ untranslated region may be between 50 and 500 nucleotides in length or longer.

[0221]

Exemplary 3′ and/or 5′ UTR sequences can be derived from mRNA molecules which are stable (e.g., globin, actin, GAPDH, tubulin, histone, or citric acid cycle enzymes) to increase the stability of the sense mRNA molecule. For example, a 5′ UTR sequence may include a partial sequence of a CMV immediate-early 1 (1E1) gene, or a fragment thereof to improve the nuclease resistance and/or improve the half-life of the polynucleotide. Also contemplated is the inclusion of a sequence encoding human growth hormone (hGH), or a fragment thereof to the 3′ end or untranslated region of the polynucleotide (e.g., mRNA) to further stabilize the polynucleotide. Generally, these modifications improve the stability and/or pharmacokinetic properties (e.g., half-life) of the polynucleotide relative to their unmodified counterparts, and include, for example modifications made to improve such polynucleotides' resistance to in vivo nuclease digestion.

Pharmaceutical Formulations of Dendritic Anionic Lipids (DALs) and Nucleic Acids

[0222]

According to the present invention, a nucleic acid, e.g., mRNA encoding a protein (e.g., a full length, fragment or portion of a protein) as described herein may be delivered as naked RNA (unpackaged) or via delivery vehicles. As used herein, the terms “delivery vehicle,” “transfer vehicle,” “nanoparticle” or grammatical equivalent, are used interchangeably.

[0223]

For example, the present invention provides a composition (e.g., a pharmaceutical composition) comprising a DAL of the present invention and one or more polynucleotides. A composition (e.g., a pharmaceutical composition) may further comprise one or more cationic lipids, one or more non-cationic lipids, one or more cholesterol-based lipids and/or one or more PEG-modified lipids.

[0224]

Liposomal Delivery Vehicles

[0225]

In some embodiments, a suitable delivery vehicle is a liposomal delivery vehicle, e.g., a lipid nanoparticle. As used herein, liposomal delivery vehicles, e.g., lipid nanoparticles, are usually characterized as microscopic vesicles having an interior aqua space sequestered from an outer medium by a membrane of one or more bilayers. Bilayer membranes of liposomes are typically formed by amphiphilic molecules, such as lipids of synthetic or natural origin that comprise spatially separated hydrophilic and hydrophobic domains (Lasic, Trends Biotechnol., 16: 307-321, 1998). Bilayer membranes of the liposomes can also be formed by amphophilic polymers and surfactants (e.g., polymerosomes, niosomes, etc.). In the context of the present invention, a liposomal delivery vehicle typically serves to transport a desired mRNA to a target cell or tissue.

[0226]

In embodiments, a composition (e.g., a pharmaceutical composition) comprises an mRNA encoding a protein, encapsulated within a liposome. In embodiments, a liposome comprises one or more cationic lipids, one or more non-cationic lipids, one or more cholesterol-based lipids and one or more PEG-modified lipids, and at least one non-cationic lipid is a DAL as described herein. In embodiments, a composition comprises an mRNA encoding for a protein (e.g., any protein described herein). In embodiments, a composition comprises an mRNA encoding for cystic fibrosis transmembrane conductance regulator (CFTR) protein. In embodiments, a composition comprises an mRNA encoding for ornithine transcarbamylase (OTC) protein.

[0227]

In embodiments, a composition (e.g., a pharmaceutical composition) comprises a nucleic acid encapsulated within a liposome, wherein the liposome comprises any DAL as described herein. In embodiments, a composition further comprises one more lipids selected from the group consisting of one or more cationic lipids, one or more non-cationic lipids, and one or more PEG-modified lipids. In embodiments, a nucleic acid is an mRNA encoding a peptide or polypeptide. In embodiments, an mRNA encodes a peptide or polypeptide for use in the delivery to or treatment of the lung of a subject or a lung cell (e.g., an mRNA encodes cystic fibrosis transmembrane conductance regulator (CFTR) protein). In embodiments, an mRNA encodes a peptide or polypeptide for use in the delivery to or treatment of the liver of a subject or a liver cell (e.g., an mRNA encodes ornithine transcarbamylase (OTC) protein).

[0228]

In embodiments, a liposomal delivery vehicle (e.g., a lipid nanoparticle) can have a net positive charge. In embodiments, a liposomal delivery vehicle (e.g., a lipid nanoparticle) can have a net negative charge. In embodiments, a liposomal delivery vehicle (e.g., a lipid nanoparticle) can have a net neutral charge.

[0229]

In embodiments, a delivery vehicle (e.g., a liposomal delivery vehicle such as a lipid nanoparticle) comprises about 0.1 wt % to about 15 wt % Dendritic Anionic Lipids (e.g., lipids of formula (I)). In embodiments, a delivery vehicle (e.g., a liposomal delivery vehicle such as a lipid nanoparticle) comprises about 0.5 wt %, about 1 wt %, about 3 wt %, about 5 wt %, or about 10 wt % Dendritic Anionic Lipids (e.g., lipids of formula (I)). In embodiments, the percentage results in an improved beneficial effect (e.g., improved delivery to targeted tissues such as the liver or the lung).

[0230]

In embodiments, a lipid nanoparticle that encapsulates a nucleic acid (e.g., mRNA encoding a peptide or polypeptide) comprises one or more Dendritic Anionic Lipids (e.g., lipids of formula (I)). In embodiments, the lipid nanoparticle that encapsulates a nucleic acid (e.g., mRNA encoding a peptide or polypeptide) comprises one or more Dendritic Anionic Lipids and one or more lipids selected from the group consisting of a cationic lipid, a non-cationic lipid, and a PEGylated lipid. In embodiments, the lipid nanoparticle that encapsulates a nucleic acid (e.g., mRNA encoding a peptide or polypeptide) comprises one or more Dendritic Anionic Lipids; one or more lipids selected from the group consisting of a cationic lipid, a non-cationic lipid, and a PEGylated lipid; and further comprises a cholesterol-based lipid. In embodiments, the lipid nanoparticle that encapsulates a nucleic acid (e.g., mRNA encoding a peptide or polypeptide) comprises one or more Dendritic Anionic Lipids, as well as one or more lipids selected from the group consisting of a cationic lipid, a non-cationic lipid, a PEGylated lipid, and a cholesterol-based lipid. In certain embodiments, the Dendritic Anionic Lipids (e.g., lipids of formula (I) can comprise from about 0.1 mol % to about 50 mol %, or from 0.5 mol % to about 50 mol %, or from about 1 mol % to about 25 mol %, or from about 1 mol % to about 10 mol % of the total amount of lipids in the lipid nanoparticle. In certain embodiments, the Dendritic Anionic Lipids (e.g., lipids of formula (I) can comprise greater than about 0.1 mol %, or greater than about 0.5 mol %, or greater than about 1 mol %, or greater than about 5 mol % of the total amount of lipids in the lipid nanoparticle. In certain embodiments, the Dendritic Anionic Lipids (e.g., lipids of formula (I) can comprise less than about 25 mol %, or less than about 10 mol %, or less than about 5 mol %, or less than about 1 mol % of the total amount of lipids in the lipid nanoparticle. In embodiments, the percentage results in an improved beneficial effect (e.g., improved delivery to targeted tissues such as the liver or the lung).

[0231]

Cationic Lipids

[0232]

In some embodiments, liposomes may comprise one or more cationic lipids. As used herein, the phrase “cationic lipid” refers to any of a number of lipid species that have a net positive charge at a selected pH, such as physiological pH. Several cationic lipids have been described in the literature, many of which are commercially available. Particularly suitable cationic lipids for use in the compositions and methods of the invention include those described in international patent publications WO 2010/053572 (and particularly, CI 2-200 described at paragraph) and WO 2012/170930, both of which are incorporated herein by reference. In certain embodiments, the compositions and methods of the invention employ a lipid nanoparticles comprising an ionizable cationic lipid described in U.S. provisional patent application 61/617,468, filed Mar. 29, 2012 (incorporated herein by reference), such as, e.g, (15Z, 18Z)—N,N-dimethyl-6-(9Z, 12Z)-octadeca-9, 12-dien-1-yl)tetracosa-15,18-dien-1-amine (HGT5000), (15Z, 18Z)—N,N-dimethyl-6-((9Z, 12Z)-octadeca-9, 12-dien-1-yl)tetracosa-4,15,18-trien-1-amine (HGT5001), and (15Z,18Z)—N,N-dimethyl-6-((9Z, 12Z)-octadeca-9, 12-dien-1-yl)tetracosa-5, 15, 18-trien-1-amine (HGT5002).

[0233]

In some embodiments, provided liposomes include a cationic lipid described in WO 2013/063468, filed Oct. 26, 2012 and in U.S. provisional application 61/953,516, filed Mar. 14, 2014, both of which are incorporated by reference herein.

[0234]

In particular embodiments, provided liposomes include a cationic lipid cKK-E12, or (3,6-bis(4-(bis(2-hydroxydodecyl)amino)butyl)piperazine-2,5-dione). Structure of cKK-E12 is shown below:

[0000]

[0235]

In some embodiments, the one or more cationic lipids may be N-[l-(2,3-dioleyloxy)propyl]-N,N,N-trimethylammonium chloride or “DOTMA” (Feigner et al. (Proc. Nat'l Acad. Sci. 84, 7413 (1987); U.S. Pat. No. 4,897,355). DOTMA can be formulated alone or can be combined with the neutral lipid, dioleoylphosphatidyl-ethanolamine or “DOPE” or other cationic or non-cationic lipids into a liposomal transfer vehicle or a lipid nanoparticle, and such liposomes can be used to enhance the delivery of nucleic acids into target cells. Other suitable cationic lipids include, for example, 5-carboxyspermylglycinedioctadecylamide or “DOGS,” 2,3-dioleyloxy-N-[2(spermine-carboxamido)ethyl]-N,N-dimethyl-l-propanaminium or “DOSPA” (Behr et al. Proc. Nat'l Acad. Sci. 86, 6982 (1989); U.S. Pat. Nos. 5,171,678; 5,334,761), 1,2-Dioleoyl-3-Dimethylammonium-Propane or “DODAP”, 1,2-Dioleoyl-3-Trimethylammonium-Propane or “DOTAP”.

[0236]

Additional exemplary cationic lipids also include 1,2-distearyloxy-N,N-dimethyl-3-aminopropane or “DSDMA”, 1,2-dioleyloxy-N,N-dimethyl-3-aminopropane or “DODMA”, 1,2-dilinoleyloxy-N,N-dimethyl-3-aminopropane or “DLinDMA”, 1,2-dilinolenyloxy-N,N-dimethyl-3-aminopropane or “DLenDMA”, N-dioleyl-N,N-dimethylammonium chloride or “DODAC”, N,N-distearyl-N,N-dimethylarnrnonium bromide or “DDAB”, N-(1,2-dimyristyloxyprop-3-yl)-N,N-dimethyl-N-hydroxyethyl ammonium bromide or “DMRIE”, 3-dimethylamino-2-(cholest-5-en-3-beta-oxybutan-4-oxy)-1-(cis,cis-9,12-octadecadienoxy)propane or “CLinDMA”, 2-[5′-(cholest-5-en-3-beta-oxy)-3′-oxapentoxy)-3-dimethy 1-1-(cis,cis-9′, 1-2′-octadecadienoxy)propane or “CpLinDMA”, N,N-dimethyl-3,4-dioleyloxybenzylamine or “DMOBA”, 1,2-N,N′-dioleylcarbamyl-3-dimethylaminopropane or “DOcarbDAP”, 2,3-Dilinoleoyloxy-N,N-dimethylpropylamine or “DLinDAP”, 1,2-NN-Dilinoleylcarbamyl-3-dimethylaminopropane or “DLincarbDAP”, 1,2-Dilinoleoylcarbamyl-3-dimethylaminopropane or “DLinCDAP”, 2,2-dilinoleyl-4-dimethylaminomethyl-[l,3]-dioxolane or “DLin-DMA”, 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane or “DLin-K-XTC2-DMA”, and 2-(2,2-di((9Z,12Z)-octadeca-9,1 2-dien-1-yl)-1,3-dioxolan-4-yl)-N,N-dimethylethanamine (DLin-KC2-DMA)) (See, WO 2010/042877; Semple et al., Nature Biotech. 28: 172-176 (2010)), or mixtures thereof. (Heyes, J., et al., J Controlled Release 107: 276-287 (2005); Morrissey, D V., et al., Nat. Biotechnol. 23(8): 1003-1007 (2005); PCT Publication WO2005/121348A1). In some embodiments, one or more of the cationic lipids comprise at least one of an imidazole, dialkylamino, or guanidinium moiety.

[0237]

In some embodiments, the one or more cationic lipids may be chosen from XTC (2,2-Dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane), MC3 (((6Z,9Z,28Z,31Z)-heptatriaconta-6,9,28,31-tetraen-19-yl 4-(dimethylamino)butanoate), ALNY-100 ((3aR,5s,6aS)—N,N-dimethyl-2,2-di((9Z,12Z)-octadeca-9,12-dienyl)tetrahydro-3aH-cyclopenta[d] [1,3]dioxol-5-amine)), NC98-5 (4,7,13-tris(3-oxo-3-(undecylamino)propyl)-N1,N16-diundecyl-4,7,10,13-tetraazahexadecane-1,16-diamide), DODAP (1,2-dioleyl-3-dimethylammonium propane), HGT4003 (WO 2012/170889, the teachings of which are incorporated herein by reference in their entirety), ICE (WO 2011/068810, the teachings of which are incorporated herein by reference in their entirety), HGT5000 (U.S. Provisional Patent Application No. 61/617,468, the teachings of which are incorporated herein by reference in their entirety) or HGT5001 (cis or trans) (Provisional Patent Application No. 61/617,468), aminoalcohol lipidoids such as those disclosed in WO2010/053572, DOTAP (1,2-dioleyl-3-trimethylammonium propane), DOTMA (1,2-di-O-octadecenyl-3-trimethylammonium propane), DLinDMA (Heyes, J.; Palmer, L.; Bremner, K.; MacLachlan, I. “Cationic lipid saturation influences intracellular delivery of encapsulated nucleic acids” J. Contr. Rel. 2005, 107, 276-287), DLin-KC2-DMA (Semple, S.C. et al. “Rational Design of Cationic Lipids for siRNA Delivery” Nature Biotech. 2010, 28, 172-176), C12-200 (Love, K. T. et al. “Lipid-like materials for low-dose in vivo gene silencing” PNAS 2010, 107, 1864-1869).

[0238]

In some embodiments, the percentage of cationic lipid in a liposome may be greater than 10%, greater than 20%, greater than 30%, greater than 40%, greater than 50%, greater than 60%, or greater than 70%. In some embodiments, cationic lipid(s) constitute(s) about 30-50% (e.g., about 30-45%, about 30-40%, about 35-50%, about 35-45%, or about 35-40%) of the liposome by weight. In some embodiments, the cationic lipid (e.g., cKK-E12) constitutes about 30%, about 35%, about 40%, about 45%, or about 50% of the liposome by molar ratio.

[0239]

Non-Cationic/Helper Lipids

[0240]

Provided liposomes contain one or more non-cationic (“helper”) lipids. As used herein, the phrase “non-cationic lipid” refers to any neutral, zwitterionic or anionic lipid. As used herein, the phrase “anionic lipid” refers to any of a number of lipid species that carry a net negative charge at a selected pH, such as physiological pH. Specifically, provided liposomes comprise at least one dendritic anion lipid (DAL) as described herein. Additional non-cationic lipids include, but are not limited to, distearoylphosphatidylcholine (DSPC), dioleoylphosphatidylcholine (DOPC), dipalmitoylphosphatidylcholine (DPPC), dioleoylphosphatidylglycerol (DOPG), dipalmitoylphosphatidylglycerol (DPPG), dioleoylphosphatidylethanolamine (DOPE), palmitoyloleoylphosphatidylcholine (POPC), palmitoyloleoyl-phosphatidylethanolamine (POPE), dioleoyl-phosphatidylethanolamine 4-(N-maleimidomethyl)-cyclohexane-1-carboxylate (DOPE-mal), dipalmitoyl phosphatidyl ethanolamine (DPPE), dimyristoylphosphoethanolamine (DMPE), distearoyl-phosphatidyl-ethanolamine (DSPE), 16-O-monomethyl PE, 16-O-dimethyl PE, 18-1-trans PE, l-stearoyl-2-oleoyl-phosphatidyethanolamine (SOPE), or a mixture thereof.

[0241]

In some embodiments, such non-cationic lipids may be used alone, but are preferably used in combination with other excipients, for example, cationic lipids. In some embodiments, the non-cationic lipid may comprise a molar ratio of about 5% to about 90%, or about 10% to about 70% of the total lipid present in a liposome. In some embodiments, a non-cationic lipid is a neutral lipid, i.e., a lipid that does not carry a net charge in the conditions under which the composition is formulated and/or administered. In some embodiments, the percentage of non-cationic lipid in a liposome may be greater than 5%, greater than 10%, greater than 20%, greater than 30%, or greater than 40%.

[0242]

Cholesterol-Based Lipids

[0243]

In some embodiments, provided liposomes comprise one or more cholesterol-based lipids.

[0244]

For example, suitable cholesterol-based cationic lipids include, for example, DC-Choi (N,N-dimethyl-N-ethylcarboxamidocholesterol), l,4-bis(3-N-oleylamino-propyl)piperazine (Gao, et al. Biochem. Biophys. Res. Comm. 179, 280 (1991); Wolf et al. BioTechniques 23, 139 (1997); U.S. Pat. No. 5,744,335), or ICE. In some embodiments, the cholesterol-based lipid may comprise a molar ration of about 2% to about 30%, or about 5% to about 20% of the total lipid present in a liposome. In some embodiments, the percentage of cholesterol-based lipid in the lipid nanoparticle may be greater than 5, %, 10%, greater than 20%, greater than 30%, or greater than 40%.

[0245]

PEGylated Lipids

[0246]

In some embodiments, provided liposomes comprise one or more PEGylated lipids. For example, the use of polyethylene glycol (PEG)-modified phospholipids and derivatized lipids such as derivatized ceramides (PEG-CER), including N-Octanoyl-Sphingosine-I-[Succinyl(Methoxy Polyethylene Glycol)-2000] (C8 PEG-2000 ceramide) is also contemplated by the present invention in combination with one or more of the cationic and, in some embodiments, other lipids together which comprise the liposome. Contemplated PEG-modified lipids (also referred to herein as a PEGylated lipid, which term is interchangeable with PEG-modified lipid) include, but are not limited to, a polyethylene glycol chain of up to 5 kDa in length covalently attached to a lipid with alkyl chain(s) of C6-C20 length. In some embodiments, a PEG-modified or PEGylated lipid is PEGylated cholesterol or PEG-2K. The addition of such components may prevent complex aggregation and may also provide a means for increasing circulation lifetime and increasing the delivery of the lipid-nucleic acid composition to the target cell, (Klibanov et al. (1990) FEBS Letters, 268 (1): 235-237), or they may be selected to rapidly exchange out of the formulation in vivo (see U.S. Pat. No. 5,885,613).

[0247]

In some embodiments, particularly useful exchangeable lipids are PEG-ceramides having shorter acyl chains (e.g., C14 or C18). The PEG-modified phospholipid and derivitized lipids of the present invention may comprise a molar ratio from about 0% to about 15%, about 0.5% to about 15%, about 1% to about 15%, about 4% to about 10%, or about 2% of the total lipid present in the liposome.

[0248]

According to various embodiments, the selection of cationic lipids, non-cationic lipids and/or PEG-modified lipids which comprise the lipid nanoparticle, as well as the relative molar ratio of such lipids to each other, is based upon the characteristics of the selected lipid(s), the nature of the intended target cells, the characteristics of the mRNA to be delivered. Additional considerations include, for example, the saturation of the alkyl chain, as well as the size, charge, pH, pKa, fusogenicity and toxicity of the selected lipid(s). Thus, the molar ratios may be adjusted accordingly.

[0249]

In embodiments of formula (I), the anionic headgroup moiety of formula (I) (e.g., as represented by Dm) can be placed onto a PEGylated lipid (e.g., corresponding to moiety L). In embodiments, the PEG linker can have a molecular weight of about 1 kDa or less. In embodiments, the PEG linker can have a molecular weight of about 1 kDa to about 50 kDa. In embodiments, the PEG linker can have a molecular weight of about 1 kDa, about 2 kDa, about 5 kDa, about 10 kDa, about 20 kDa, or about 40 kDa.

Pharmaceutical Formulations and Therapeutic Uses

[0250]

Pharmaceutical formulations containing (DAL) and nucleic acids provided by the present invention may be used for various therapeutic purposes. To facilitate delivery of nucleic acids in vivo, DAL/nucleic acids can be formulated in combination with one or more additional pharmaceutical carriers, targeting ligands or stabilizing reagents. In some embodiments, DAL(s) can be formulated via pre-mixed lipid solution. In other embodiments, DAL(s) can be formulated using post-insertion techniques into the lipid membrane of the nanoparticles. Techniques for formulation and administration of drugs may be found in “Remington's Pharmaceutical Sciences,” Mack Publishing Co., Easton, Pa., latest edition.

[0251]

Suitable routes of administration include, for example, oral, rectal, vaginal, transmucosal, pulmonary including intratracheal or inhaled, or intestinal administration; parenteral delivery, including intradermal, transdermal (topical), intramuscular, subcutaneous, intramedullary injections, as well as intrathecal, direct intraventricular, intravenous, intraperitoneal, or intranasal. In particular embodiments, the intramuscular administration is to a muscle selected from the group consisting of skeletal muscle, smooth muscle and cardiac muscle. In some embodiments the administration results in delivery of the nucleic acids to a muscle cell. In some embodiments the administration results in delivery of the nucleic acids to a hepatocyte (i.e., liver cell).

[0252]

Alternatively or additionally, pharmaceutical formulations of the invention may be administered in a local rather than systemic manner, for example, via injection of the pharmaceutical formulation directly into a targeted tissue, preferably in a sustained release formulation. Local delivery can be affected in various ways, depending on the tissue to be targeted. Exemplary tissues in which delivered mRNA may be delivered and/or expressed include, but are not limited to the liver, kidney, heart, spleen, serum, brain, skeletal muscle, lymph nodes, skin, and/or cerebrospinal fluid. In embodiments, the tissue to be targeted in the liver. For example, aerosols containing compositions of the present invention can be inhaled (for nasal, tracheal, or bronchial delivery); compositions of the present invention can be injected into the site of injury, disease manifestation, or pain, for example; compositions can be provided in lozenges for oral, tracheal, or esophageal application; can be supplied in liquid, tablet or capsule form for administration to the stomach or intestines, can be supplied in suppository form for rectal or vaginal application; or can even be delivered to the eye by use of creams, drops, or even injection.

[0253]

The present invention provides methods for delivering a composition having full-length mRNA molecules encoding a peptide or polypeptide of interest for use in the treatment of a subject, e.g., a human subject or a cell of a human subject or a cell that is treated and delivered to a human subject.

[0254]

Accordingly, in certain embodiments the present invention provides a method for producing a therapeutic composition comprising full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the lung of a subject or a lung cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for cystic fibrosis transmembrane conductance regulator (CFTR) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for ATP-binding cassette sub-family A member 3 protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for dynein axonemal intermediate chain 1 protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for dynein axonemal heavy chain 5 (DNAH5) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for alpha-1-antitrypsin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for forkhead box P3 (FOXP3) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes one or more surfactant protein, e.g., one or more of surfactant A protein, surfactant B protein, surfactant C protein, and surfactant D protein.

[0255]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the liver of a subject or a liver cell. Such peptides and polypeptides can include those associated with a urea cycle disorder, associated with a lysosomal storage disorder, with a glycogen storage disorder, associated with an amino acid metabolism disorder, associated with a lipid metabolism or fibrotic disorder, associated with methylmalonic acidemia, or associated with any other metabolic disorder for which delivery to or treatment of the liver or a liver cell with enriched full-length mRNA provides therapeutic benefit.

[0256]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein associated with a urea cycle disorder. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for ornithine transcarbamylase (OTC) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for arginosuccinate synthetase 1 protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for carbamoyl phosphate synthetase I protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for arginosuccinate lyase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for arginase protein.

[0257]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein associated with a lysosomal storage disorder. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for alpha galactosidase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for glucocerebrosidase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for iduronate-2-sulfatase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for iduronidase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for N-acetyl-alpha-D-glucosaminidase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for heparan N-sulfatase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for galactosamine-6 sulfatase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for beta-galactosidase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for lysosomal lipase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for arylsulfatase B (N-acetylgalactosamine-4-sulfatase) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for transcription factor EB (TFEB).

[0258]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein associated with a glycogen storage disorder. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for acid alpha-glucosidase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for glucose-6-phosphatase (G6PC) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for liver glycogen phosphorylase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for muscle phosphoglycerate mutase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for glycogen debranching enzyme.

[0259]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein associated with amino acid metabolism. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for phenylalanine hydroxylase enzyme. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for glutaryl-CoA dehydrogenase enzyme. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for propionyl-CoA caboxylase enzyme. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for oxalase alanine-glyoxylate aminotransferase enzyme.

[0260]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein associated with a lipid metabolism or fibrotic disorder. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a mTOR inhibitor. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for ATPase phospholipid transporting 8B1 (ATP8B1) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for one or more NF-kappa B inhibitors, such as one or more of I-kappa B alpha, interferon-related development regulator 1 (IFRD1), and Sirtuin 1 (SIRT1). In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for PPAR-gamma protein or an active variant.

[0261]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein associated with methylmalonic acidemia. For example, in certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for methylmalonyl CoA mutase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for methylmalonyl CoA epimerase protein.

[0262]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA for which delivery to or treatment of the liver can provide therapeutic benefit. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for ATP7B protein, also known as Wilson disease protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for porphobilinogen deaminase enzyme. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for one or clotting enzymes, such as Factor VIII, Factor IX, Factor VII, and Factor X. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for human hemochromatosis (HFE) protein.

[0263]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the cardiovasculature of a subject or a cardiovascular cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for vascular endothelial growth factor A protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for relaxin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for bone morphogenetic protein-9 protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for bone morphogenetic protein-2 receptor protein.

[0264]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the muscle of a subject or a muscle cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for dystrophin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for frataxin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the cardiac muscle of a subject or a cardiac muscle cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein that modulates one or both of a potassium channel and a sodium channel in muscle tissue or in a muscle cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein that modulates a Kv7.1 channel in muscle tissue or in a muscle cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a protein that modulates a Nav1.5 channel in muscle tissue or in a muscle cell.

[0265]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the nervous system of a subject or a nervous system cell. For example, in certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for survival motor neuron 1 protein. For example, in certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for survival motor neuron 2 protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for frataxin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for ATP binding cassette subfamily D member 1 (ABCD1) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for CLN3 protein.

[0266]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the blood or bone marrow of a subject or a blood or bone marrow cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for beta globin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for Bruton's tyrosine kinase protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for one or clotting enzymes, such as Factor VIII, Factor IX, Factor VII, and Factor X.

[0267]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the kidney of a subject or a kidney cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for collagen type IV alpha 5 chain (COL4A5) protein.

[0268]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery to or treatment of the eye of a subject or an eye cell. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for ATP-binding cassette sub-family A member 4 (ABCA4) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for retinoschisin protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for retinal pigment epithelium-specific 65 kDa (RPE65) protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for centrosomal protein of 290 kDa (CEP290).

[0269]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes a peptide or polypeptide for use in the delivery of or treatment with a vaccine for a subject or a cell of a subject. For example, in certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from an infectious agent, such as a virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from influenza virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from respiratory syncytial virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from rabies virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from cytomegalovirus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from rotavirus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from a hepatitis virus, such as hepatitis A virus, hepatitis B virus, or hepatis C virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from human papillomavirus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from a herpes simplex virus, such as herpes simplex virus 1 or herpes simplex virus 2. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from a human immunodeficiency virus, such as human immunodeficiency virus type 1 or human immunodeficiency virus type 2. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from a human metapneumovirus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from a human parainfluenza virus, such as human parainfluenza virus type 1, human parainfluenza virus type 2, or human parainfluenza virus type 3. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from malaria virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from zika virus. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen from chikungunya virus.

[0270]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen associated with a cancer of a subject or identified from a cancer cell of a subject. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen determined from a subject's own cancer cell, i.e., to provide a personalized cancer vaccine. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antigen expressed from a mutant KRAS gene.

[0271]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antibody. In certain embodiments, the antibody can be a bi-specific antibody. In certain embodiments, the antibody can be part of a fusion protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antibody to OX40. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antibody to VEGF. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antibody to tissue necrosis factor alpha. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antibody to CD3. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an antibody to CD19.

[0272]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an immunomodulator. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for Interleukin 12. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for Interleukin 23. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for Interleukin 36 gamma. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a constitutively active variant of one or more stimulator of interferon genes (STING) proteins.

[0273]

In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an endonuclease. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for an RNA-guided DNA endonuclease protein, such as Cas 9 protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a meganuclease protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a transcription activator-like effector nuclease protein. In certain embodiments the present invention provides a method for producing a therapeutic composition having full-length mRNA that encodes for a zinc finger nuclease protein.

[0274]

In embodiments, exemplary therapeutic uses result from the delivery of mRNA encoding a secreted protein. Accordingly, in embodiments, the compositions and methods of the invention provide for delivery of mRNA encoding a secreted protein. In some embodiments, the compositions and methods of the invention provide for delivery of mRNA encoding one or more secreted proteins listed in Table 2; thus, compositions of the invention may comprise an mRNA encoding a protein listed in Table 2 (or a homolog thereof) along with other components set out herein, and methods of the invention may comprise preparing and/or administering a composition comprising an mRNA encoding a protein listed in Table 2 (or a homolog thereof) along with other components set out herein

[0000]

Secreted Proteins
Uniprot IDProtein NameGene Name
A1E959Odontogenic ameloblast-associated proteinODAM
A1KZ92Peroxidasin-like proteinPXDNL
A1L453Serine protease 38PRSS38
A1L4H1Soluble scavenger receptor cysteine-richSSC5D
domain-containing protein SSC5D
A2RUU4Colipase-like protein 1CLPSL1
A2VDF0Fucose mutarotaseFUOM
A2VEC9SCO-spondinSSPO
A3KMH1von Willebrand factor A domain-containingVWA8
protein 8
A4D0S4Laminin subunit beta-4LAMB4
A4D1T9Probable inactive serine protease 37PRSS37
A5D8T8C-type lectin domain family 18 member ACLEC18A
A6NC86phospholipase A2 inhibitor and Ly6/PLAURPINLYP
domain-containing protein
A6NCI4von Willebrand factor A domain-containingVWA3A
protein 3A
A6ND01Probable folate receptor deltaFOLR4
A6NDD2Beta-defensin 108B-like
A6NE02BTB/POZ domain-containing protein 17BTBD17
A6NEF6Growth hormone 1GH1
A6NF02NPIP-like protein LOC730153
A6NFB4HCG1749481, isoform CRA_kCSH1
A6NFZ4Protein FAM24AFAM24A
A6NG13Glycosyltransferase 54 domain-containing
protein
A6NGN9IgLON family member 5IGLON5
A6NHN0Otolin-1OTOL1
A6NHN6Nuclear pore complex-interacting protein-likeNPIPL2
2
A6NI73Leukocyte immunoglobulin-like receptorLILRA5
subfamily A member 5
A6NIT4Chorionic somatomammotropin hormone 2CSH2
isoform 2
A6NJ69IgA-inducing protein homologIGIP
A6NKQ9Choriogonadotropin subunit beta variant 1 CGB1
A6NMZ7Collagen alpha-6(VI) chainCOL6A6
A6NNS2Dehydrogenase/reductase SDR familyDHRS7C
member 7C
A6XGL2Insulin A chainINS
A8K0G1Protein WntWNT7B
A8K2U0Alpha-2-macroglobulin-like protein 1A2ML1
A8K7I4Calcium-activated chloride channel regulatorCLCA1
1
A8MTL9Serpin-like protein HMSDHMSD
A8MV23Serpin E3SERPINE3
A8MZH6Oocyte-secreted protein 1 homologOOSP1
A8TX70Collagen alpha-5(VI) chainCOL6A5
B0ZBE8Natriuretic peptideNPPA
B1A4G9SomatotropinGH1
B1A4H2HCG1749481, isoform CRA_dCSH1
B1A4H9Chorionic somatomammotropin hormoneCSH2
B1AJZ6Protein WntWNT4
B1AKI9Isthmin-1ISM1
B2RNN3Complement C1q and tumor necrosis factor- C1QTNF9B
related protein 9B
B2RUY7von Willebrand factor C domain-containingVWC2L
protein 2-like
B3GLJ2Prostate and testis expressed protein 3PATE3
B4DI03SEC11-like 3 (S.cerevisiae), isoform CRA_aSEC11L3
B4DJF9Protein WntWNT4
B4DUL4SEC11-like 1 (S.cerevisiae), isoform CRA_dSEC11L1
B5MCC8Protein WntWNT10B
B8A595Protein WntWNT7B
B8A597Protein WntWNT7B
B8A598Protein WntWNT7B
B9A064Immunoglobulin lambda-like polypeptide 5IGLL5
C9J3H3Protein WntWNT10B
C9J8I8Protein WntWNT5A
C9JAF2Insulin-like growth factor II Ala-25 DelIGF2
C9JCI2Protein WntWNT10B
C9JL84HERV-H LTR-associating protein 1HHLA1
C9JNR5Insulin A chainINS
C9JUI2Protein WntWNT2
D6RF47Protein WntWNT8A
D6RF94Protein WntWNT8A
E2RYF7Protein PBMUCL2HCG22
E5RFR1PENK(114-133)PENK
E7EML9Serine protease 44PRSS44
E7EPC3Protein WntWNT9B
E7EVP0NociceptinPNOC
E9PD02Insulin-like growth factor IIGF1
E9PH60Protein WntWNT16
E9PJL6Protein WntWNT11
F5GYM2Protein WntWNT5B
F5H034Protein WntWNT5B
F5H364Protein WntWNT5B
F5H7Q6Protein WntWNT5B
F8WCM5Protein INS-IGF2INS-IGF2
F8WDR1Protein WntWNT2
H0Y663Protein WntWNT4
H0YK72Signal peptidase complex catalytic subunitSEC11A
SEC11A
H0YK83Signal peptidase complex catalytic subunitSEC11A
SEC11A
H0YM39Chorionic somatomammotropin hormoneCSH2
H0YMT7Chorionic somatomammotropin hormoneCSH1
H0YN17Chorionic somatomammotropin hormoneCSH2
H0YNA5Signal peptidase complex catalytic subunitSEC11A
SEC11A
H0YNG3Signal peptidase complex catalytic subunitSEC11A
SEC11A
H0YNX5Signal peptidase complex catalytic subunitSEC11A
SEC11A
H7BZB8Protein WntWNT10A
H9KV56Choriogonadotropin subunit beta variant 2 CGB2
I3L0L8Protein WntWNT9B
J3KNZ1Choriogonadotropin subunit beta variant 1 CGB1
J3KP00Choriogonadotropin subunit betaCGB7
J3QT02Choriogonadotropin subunit beta variant 1 CGB1
O00175C-C motif chemokine 24CCL24
O00182Galectin-9LGALS9
O00187Mannan-binding lectin serine protease 2MASP2
O00230CortistatinCORT
O00253Agouti-related proteinAGRP
O0027012-(S)-hydroxy-5,8,10,14-eicosatetraenoicGPR31
acid receptor
O00292Left-right determination factor 2LEFTY2
O00294Tubby-related protein 1TULP1
O00295Tubby-related protein 2TULP2
O00300Tumor necrosis factor receptor superfamilyTNFRSF11B
member 11B
O00339Matrilin-2MATN2
O00391Sulfhydryl oxidase 1QSOX1
O00468AgrinAGRN
O00515Ladinin-1LAD1
O00533Processed neural cell adhesion molecule L1-CHL1
like protein
O00584Ribonuclease T2RNASET2
O00585C-C motif chemokine 21CCL21
O00602Ficolin-1FCN1
O00622Protein CYR61CYR61
O00626MDC(5-69)CCL22
O00634Netrin-3NTN3
O00744Protein Wnt-10bWNT10B
O00755Protein Wnt-7aWNT7A
O14498Immunoglobulin superfamily containingISLR
leucine-rich repeat protein
O14511Pro-neuregulin-2, membrane-bound isoformNRG2
O14594Neurocan core proteinNCAN
O14625C-X-C motif chemokine 11CXCL11
O14638EctonucleotideENPP3
pyrophosphatase/phosphodiesterase family
member 3
O14656Torsin-1ATOR1A
O14657Torsin-1BTOR1B
O14786Neuropilin-1NRP1
O14788Tumor necrosis factor ligand superfamilyTNFSF11
member 11, membrane form
O14791Apolipoprotein L1APOL1
O14793Growth/differentiation factor 8MSTN
O14904Protein Wnt-9aWNT9A
O14905Protein Wnt-9bWNT9B
O14944ProepiregulinEREG
O14960Leukocyte cell-derived chemotaxin-2LECT2
O15018Processed PDZ domain-containing protein 2PDZD2
O15041Semaphorin-3ESEMA3E
O15072A disintegrin and metalloproteinase withADAMTS3
thrombospondin motifs 3
O15123Angiopoietin-2ANGPT2
O15130Neuropeptide FFNPFF
O15197Ephrin type-B receptor 6EPHB6
O15204ADAM DEC1ADAMDEC1
O15230Laminin subunit alpha-5LAMA5
O15232Matrilin-3MATN3
O15240Neuroendocrine regulatory peptide-1VGF
O15263Beta-defensin 4ADEFB4A
O15335ChondroadherinCHAD
O15393Transmembrane protease serine 2 catalytic TMPRSS2
chain
O15444C-C motif chemokine 25CCL25
O15467C-C motif chemokine 16CCL16
O15496Group 10 secretory phospholipase A2PLA2G10
O15520Fibroblast growth factor 10FGF10
O15537RetinoschisinRS1
O43157Plexin-B1PLXNB1
O43184Disintegrin and metalloproteinase domain-ADAM12
containing protein 12
O43240Kallikrein-10KLK10
O43278Kunitz-type protease inhibitor 1SPINT1
O43320Fibroblast growth factor 16FGF16
O43323Desert hedgehog protein C-productDHH
O43405CochlinCOCH
O43508Tumor necrosis factor ligand superfamilyTNFSF12
member 12, membrane form
O43555Progonadoliberin-2GNRH2
O43557Tumor necrosis factor ligand superfamilyTNFSF14
member 14, soluble form
O43692Peptidase inhibitor 15PI15
O43699Sialic acid-binding Ig-like lectin 6SIGLEC6
O43820Hyaluronidase-3HYAL3
O43827Angiopoietin-related protein 7ANGPTL7
O43852CalumeninCALU
O43854EGF-like repeat and discoidin I-like domain-EDIL3
containing protein 3
O43866CD5 antigen-likeCD5L
O43897Tolloid-like protein 1TLL1
O43915Vascular endothelial growth factor DFIGF
O43927C-X-C motif chemokine 13CXCL13
O60218Aldo-keto reductase family 1 member B10AKR1B10
O60235Transmembrane protease serine 11DTMPRSS11D
O60258Fibroblast growth factor 17FGF17
O60259Kallikrein-8KLK8
O60383Growth/differentiation factor 9GDF9
O60469Down syndrome cell adhesion moleculeDSCAM
O60542PersephinPSPN
O60565Gremlin-1GREM1
O60575Serine protease inhibitor Kazal-type 4SPINK4
O60676Cystatin-8CST8
O60687Sushi repeat-containing protein SRPX2SRPX2
O60844Zymogen granule membrane protein 16ZG16
O60882Matrix metalloproteinase-20MMP20
O60938KeratocanKERA
O75015Low affinity immunoglobulin gamma FcFCGR3B
region receptor III-B
O75077Disintegrin and metalloproteinase domain-ADAM23
containing protein 23
O75093Slit homolog 1 proteinSLIT1
O75094Slit homolog 3 proteinSLIT3
O75095Multiple epidermal growth factor-likeMEGF6
domains protein 6
O75173A disintegrin and metalloproteinase withADAMTS4
thrombospondin motifs 4
O75200Nuclear pore complex-interacting protein-likeNPIPL1
1
O75339Cartilage intermediate layer protein 1 C1CILP
O75354Ectonucleoside triphosphateENTPD6
diphosphohydrolase 6
O75386Tubby-related protein 3TULP3
O75398Deformed epidermal autoregulatory factor 1DEAF1
homolog
O75443Alpha-tectorinTECTA
O75445UsherinUSH2A
O75462Cytokine receptor-like factor 1CRLF1
O75487Glypican-4GPC4
O75493Carbonic anhydrase-related protein 11CA11
O75594Peptidoglycan recognition protein 1PGLYRP1
O75596C-type lectin domain family 3 member ACLEC3A
O75610Left-right determination factor 1LEFTY1
O75629Protein CREG1CREG1
O75636Ficolin-3FCN3
O75711Scrapie-responsive protein 1SCRG1
O75715Epididymal secretory glutathione peroxidaseGPX5
O75718Cartilage-associated proteinCRTAP
O75829Chondrosurfactant proteinLECT1
O75830Serpin I2SERPINI2
O75882AttractinATRN
O75888Tumor necrosis factor ligand superfamilyTNFSF13
member 13
O75900Matrix metalloproteinase-23MMP23A
O75951Lysozyme-like protein 6LYZL6
O75973C1q-related factorC1QL1
O76038SecretagoginSCGN
O76061Stanniocalcin-2STC2
O76076WNT1-inducible-signaling pathway protein 2WISP2
O76093Fibroblast growth factor 18FGF18
O76096Cystatin-FCST7
O94769Extracellular matrix protein 2ECM2
O94813Slit homolog 2 protein C-productSLIT2
O94907Dickkopf-related protein 1DKK1
O94919Endonuclease domain-containing 1 proteinENDOD1
O94964N-terminal formSOGA1
O95025Semaphorin-3DSEMA3D
O95084Serine protease 23PRSS23
O95150Tumor necrosis factor ligand superfamilyTNFSF15
member 15
O95156Neurexophilin-2NXPH2
O95157Neurexophilin-3NXPH3
O95158Neurexophilin-4NXPH4
O95388WNT1-inducible-signaling pathway protein 1WISP1
O95389WNT1-inducible-signaling pathway protein 3WISP3
O95390Growth/differentiation factor 11GDF11
O95393Bone morphogenetic protein 10BMP10
O95399Urotensin-2UTS2
O95407Tumor necrosis factor receptor superfamilyTNFRSF6B
member 6B
O95428PapilinPAPLN
O95445Apolipoprotein MAPOM
O95450A disintegrin and metalloproteinase withADAMTS2
thrombospondin motifs 2
O95460Matrilin-4MATN4
O95467LHAL tetrapeptideGNAS
O95631Netrin-1NTN1
O95633Follistatin-related protein 3FSTL3
O95711Lymphocyte antigen 86LY86
O95715C-X-C motif chemokine 14CXCL14
O95750Fibroblast growth factor 19FGF19
O95760Interleukin-33IL33
O95813CerberusCER1
O95841Angiopoietin-related protein 1ANGPTL1
O95897Noelin-2OLFM2
O95925EppinEPPIN
O95965Integrin beta-like protein 1ITGBL1
O95967EGF-containing fibulin-like extracellularEFEMP2
matrix protein 2
O95968Secretoglobin family 1D member 1SCGB1D1
O95969Secretoglobin family 1D member 2SCGB1D2
O95970Leucine-rich glioma-inactivated protein 1LGI1
O95972Bone morphogenetic protein 15BMP15
O95994Anterior gradient protein 2 homologAGR2
O95998Interleukin-18-binding proteinIL18BP
O96009Napsin-ANAPSA
O96014Protein Wnt-11WNT11
P00450CeruloplasminCP
P00451Factor Villa light chainF8
P00488Coagulation factor XIII A chainF13A1
P00533Epidermal growth factor receptorEGFR
P00709Alpha-lactalbuminLALBA
P00734ProthrombinF2
P00738Haptoglobin beta chainHP
P00739Haptoglobin-related proteinHPR
P00740Coagulation factor IXa heavy chainF9
P00742Factor X heavy chainF10
P00746Complement factor DCFD
P00747Plasmin light chain BPLG
P00748Coagulation factor XIIa light chainF12
P00749Urokinase-type plasminogen activator longPLAU
chain A
P00750Tissue-type plasminogen activatorPLAT
P00751Complement factor B Ba fragmentCFB
P00797ReninREN
P009732′-5′-oligoadenylate synthase 1OAS1
P00995Pancreatic secretory trypsin inhibitorSPINK1
P01008Antithrombin-IIISERPINC1
P01009Alpha-1-antitrypsinSERPINA1
P01011Alpha-1-antichymotrypsin His-Pro-lessSERPINA3
P01019Angiotensin-1AGT
P01023Alpha-2-macroglobulinA2M
P01024Acylation stimulating proteinC3
P01031Complement C5 beta chainC5
P01033Metalloproteinase inhibitor 1TIMP1
P01034Cystatin-CCST3
P01036Cystatin-SCST4
P01037Cystatin-SNCST1
P01042Kininogen-1 light chainKNG1
P01127Platelet-derived growth factor subunit BPDGFB
P01135Transforming growth factor alphaTGFA
P01137Transforming growth factor beta-1TGFB1
P01138Beta-nerve growth factorNGF
P01148Gonadoliberin-1GNRH1
P01160Atrial natriuretic factorNPPA
P01178OxytocinOXT
P01185Vasopressin-neurophysin 2-copeptinAVP
P01189CorticotropinPOMC
P01210PENK(237-258)PENK
P01213Alpha-neoendorphinPDYN
P01215Glycoprotein hormones alpha chainCGA
P01222Thyrotropin subunit betaTSHB
P01225Follitropin subunit betaFSHB
P01229Lutropin subunit betaLHB
P01233Choriogonadotropin subunit betaCGB8
P01236ProlactinPRL
P01241SomatotropinGH1
P01242Growth hormone variantGH2
P01243Chorionic somatomammotropin hormoneCSH2
P01258KatacalcinCALCA
P01266ThyroglobulinTG
P01270Parathyroid hormonePTH
P01275GlucagonGCG
P01282Intestinal peptide PHM-27VIP
P01286SomatoliberinGHRH
P01298Pancreatic prohormonePPY
P01303C-flanking peptide of NPYNPY
P01308InsulinINS
P01344Insulin-like growth factor IIIGF2
P01350Big gastrinGAST
P01374Lymphotoxin-alphaLTA
P01375C-domain 1TNF
P01562Interferon alpha-1/13IFNA1
P01563Interferon alpha-2IFNA2
P01566Interferon alpha-10IFNA10
P01567Interferon alpha-7IFNA7
P01568Interferon alpha-21IFNA21
P01569Interferon alpha-5IFNA5
P01570Interferon alpha-14IFNA14
P01571Interferon alpha-17IFNA17
P01574Interferon betaIFNB1
P01579Interferon gammaIFNG
P01583Interleukin-1 alphaILIA
P01584Interleukin-1 betaIL1B
P01588ErythropoietinEPO
P01591Immunoglobulin J chainIGJ
P01732T-cell surface glycoprotein CD8 alpha chainCD8A
P01833Polymeric immunoglobulin receptorPIGR
P01857Ig gamma-1 chain C regionIGHG1
P01859Ig gamma-2 chain C regionIGHG2
P01860Ig gamma-3 chain C regionIGHG3
P01861Ig gamma-4 chain C regionIGHG4
P01871Ig mu chain C regionIGHM
P01880Ig delta chain C regionIGHD
P02452Collagen alpha-1(I) chainCOL1A1
P02458ChondrocalcinCOL2A1
P02461Collagen alpha-1(III) chainCOL3A1
P02462Collagen alpha-1(IV) chainCOL4A1
P02647Apolipoprotein A-IAPOA1
P02649Apolipoprotein EAPOE
P02652Apolipoprotein A-IIAPOA2
P02654Apolipoprotein C-IAPOC1
P02655Apolipoprotein C-IIAPOC2
P02656Apolipoprotein C-IIIAPOC3
P02671Fibrinogen alpha chainFGA
P02675Fibrinopeptide BFGB
P02679Fibrinogen gamma chainFGG
P02741C-reactive proteinCRP
P02743Serum amyloid P-component(1-203)APCS
P02745Complement C1q subcomponent subunit AC1QA
P02746Complement C1q subcomponent subunit BC1QB
P02747Complement C1q subcomponent subunit CC1QC
P02748Complement component C9bC9
P02749Beta-2-glycoprotein 1APOH
P02750Leucine-rich alpha-2-glycoproteinLRG1
P02751Ugl-Y2FN1
P02753Retinol-binding protein 4RBP4
P02760TrypstatinAMBP
P02763Alpha-1-acid glycoprotein 1ORM1
P02765Alpha-2-HS-glycoprotein chain AAHSG
P02766TransthyretinTTR
P02768Serum albuminALB
P02771Alpha-fetoproteinAFP
P02774Vitamin D-binding proteinGC
P02775Connective tissue-activating peptide IIIPPBP
P02776Platelet factor 4PF4
P02778CXCL10(1-73)CXCL10
P02786Transferrin receptor protein 1TFRC
P02787SerotransferrinTF
P02788Lactoferroxin-CLTF
P02790HemopexinHPX
P02808StatherinSTATH
P02810Salivary acidic proline-rich phosphoproteinPRH2
1/2
P02812Basic salivary proline-rich protein 2PRB2
P02814Peptide D1ASMR3B
P02818OsteocalcinBGLAP
P03950AngiogeninANG
P03951Coagulation factor XIa heavy chainF11
P03952Plasma kallikreinKLKB1
P0395627 kDa interstitial collagenaseMMP1
P03971Muellerian-inhibiting factorAMH
P03973AntileukoproteinaseSLPI
P04003C4b-binding protein alpha chainC4BPA
P04004Somatomedin-BVTN
P04054Phospholipase A2PLA2G1B
P04085Platelet-derived growth factor subunit APDGFA
P04090Relaxin A chainRLN2
P04114Apolipoprotein B-100APOB
P04118ColipaseCLPS
P04141Granulocyte-macrophage colony-stimulatingCSF2
factor
P04155Trefoil factor 1TFF1
P04180Phosphatidylcholine-sterol acyltransferaseLCAT
P04196Histidine-rich glycoproteinHRG
P04217Alpha-1B-glycoproteinA1BG
P04275von Willebrand antigen 2VWF
P04278Sex hormone-binding globulinSHBG
P04279Alpha-inhibin-31SEMG1
P04280Basic salivary proline-rich protein 1PRB1
P04628Proto-oncogene Wnt-1WNT1
P04745Alpha-amylase 1AMY1A
P04746Pancreatic alpha-amylaseAMY2A
P04808Prorelaxin H1RLN1
P05000Interferon omega-1IFNW1
P05013Interferon alpha-6IFNA6
P05014Interferon alpha-4IFNA4
P05015Interferon alpha-16IFNA16
P05019Insulin-like growth factor IIGF1
P05060GAWK peptideCHGB
P05090Apolipoprotein DAPOD
P05109Protein S100-A8S100A8
P05111Inhibin alpha chainINHA
P05112Interleukin-4IL4
P05113Interleukin-5IL5
P05120Plasminogen activator inhibitor 2SERPINB2
P05121Plasminogen activator inhibitor 1SERPINE1
P05154Plasma serine protease inhibitorSERPINA5
P05155Plasma protease C1 inhibitorSERPING1
P05156Complement factor I heavy chainCFI
P05160Coagulation factor XIII B chainF13B
P05161Ubiquitin-like protein ISG15ISG15
P05230Fibroblast growth factor 1FGF1
P05231Interleukin-6IL6
P05305Big endothelin-1EDN1
P05408C-terminal peptideSCG5
P05451Lithostathine-1-alphaREG1A
P05452TetranectinCLEC3B
P05543Thyroxine-binding globulinSERPINA7
P05814Beta-caseinCSN2
P05997Collagen alpha-2(V) chainCOL5A2
P06276CholinesteraseBCHE
P06307Cholecystokinin-12CCK
P08603Complement factor HCFH
P08620Fibroblast growth factor 4FGF4
P08637Low affinity immunoglobulin gamma FcFCGR3A
region receptor III-A
P08697Alpha-2-antiplasminSERPINF2
P08700Interleukin-3IL3
P08709Coagulation factor VIIF7
P08833Insulin-like growth factor-binding protein 1 IGFBP1
P08887Interleukin-6 receptor subunit alphaIL6R
P08949Neuromedin-B-32NMB
P08F94FibrocystinPKHD1
P09038Fibroblast growth factor 2FGF2
P09228Cystatin-SACST2
P09237MatrilysinMMP7
P09238Stromelysin-2MMP10
P09341Growth-regulated alpha proteinCXCL1
P09382Galectin-1LGALS1
P09466GlycodelinPAEP
P09486SPARCSPARC
P09529Inhibin beta B chainINHBB
P09544Protein Wnt-2WNT2
P09603Processed macrophage colony-stimulatingCSF1
factor 1
P09681Gastric inhibitory polypeptideGIP
P09683SecretinSCT
P09919Granulocyte colony-stimulating factorCSF3
P00091FRAS1-related extracellular matrix protein 3FREM3
P0C0L4C4d-AC4A
P0C0L5Complement C4-B alpha chainC4B
P0C0P6Neuropeptide SNPS
P0C7L1Serine protease inhibitor Kazal-type 8SPINK8
P0C862Complement C1q and tumor necrosis factor-C1QTNF9
related protein 9A
POC8F1Prostate and testis expressed protein 4PATE4
P0CG01Gastrokine-3GKN3P
P0CG36Cryptic family protein 1BCFC1B
P0CG37Cryptic proteinCFC1
P0CJ68Humanin-like protein 1MTRNR2L1
P0CJ69Humanin-like protein 2MTRNR2L2
P0CJ70Humanin-like protein 3MTRNR2L3
P0CJ71Humanin-like protein 4MTRNR2L4
P0CJ72Humanin-like protein 5MTRNR2L5
P0CJ73Humanin-like protein 6MTRNR2L6
P0CJ74Humanin-like protein 7MTRNR2L7
P0CJ75Humanin-like protein 8MTRNR2L8
P0CJ76Humanin-like protein 9MTRNR2L9
P0CJ77Humanin-like protein 10MTRNR2L10
P0DJD7Pepsin A-4PGA4
P0DJD8Pepsin A-3PGA3
P0DJD9Pepsin A-5PGA5
P0DJI8Amyloid protein ASAA1
P0DJI9Serum amyloid A-2 proteinSAA2
P10082Peptide YY(3-36)PYY
P10092Calcitonin gene-related peptide 2CALCB
P10124SerglycinSRGN
P10145MDNCF-aIL8
P10147MIP-1-alpha(4-69)CCL3
P10163Peptide P-DPRB4
P10451OsteopontinSPP1
P10599ThioredoxinTXN
P10600Transforming growth factor beta-3TGFB3
P10643Complement component C7C7
P10645Vasostatin-2CHGA
P10646Tissue factor pathway inhibitorTFPI
P10720Platelet factor 4 variant(4-74)PF4V1
P10745Retinol-binding protein 3RBP3
P10767Fibroblast growth factor 6FGF6
P10909Clusterin alpha chainCLU
P10912Growth hormone receptorGHR
P10915Hyaluronan and proteoglycan link protein 1HAPLN1
P10966T-cell surface glycoprotein CD8 beta chainCD8B
P10997Islet amyloid polypeptideIAPP
P11047Laminin subunit gamma-1LAMC1
P11150Hepatic triacylglycerol lipaseLIPC
P11226Mannose-binding protein CMBL2
P11464Pregnancy-specific beta-1-glycoprotein 1PSG1
P11465Pregnancy-specific beta-1-glycoprotein 2PSG2
P11487Fibroblast growth factor 3FGF3
P11597Cholesteryl ester transfer proteinCETP
P11684UteroglobinSCGB1A1
P11686Pulmonary surfactant-associated protein CSFTPC
P12034Fibroblast growth factor 5FGF5
P12107Collagen alpha-1(XI) chainCOL11A1
P12109Collagen alpha-1(VI) chainCOL6A1
P12110Collagen alpha-2(VI) chainCOL6A2
P12111Collagen alpha-3(VI) chainCOL6A3
P12259Coagulation factor VF5
P12272PTHrP[1-36]PTHLH
P12273Prolactin-inducible proteinPIP
P12544Granzyme AGZMA
P12643Bone morphogenetic protein 2BMP2
P12644Bone morphogenetic protein 4BMP4
P12645Bone morphogenetic protein 3BMP3
P12724Eosinophil cationic proteinRNASE3
P12821Angiotensin-converting enzyme, soluble formACE
P12838Neutrophil defensin 4DEFA4
P12872MotilinMLN
P13232Interleukin-7IL7
P13236C-C motif chemokine 4CCL4
P13284Gamma-interferon-inducible lysosomal thiolIFI30
reductase
P13500C-C motif chemokine 2CCL2
P13501C-C motif chemokine 5CCL5
P13521Secretogranin-2SCG2
P13591Neural cell adhesion molecule 1NCAM1
P13611Versican core proteinVCAN
P13671Complement component C6C6
P13688Carcinoembryonic antigen-related cellCEACAM1
adhesion molecule 1
P13725Oncostatin-MOSM
P13726Tissue factorF3
P13727Eosinophil granule major basic proteinPRG2
P13942Collagen alpha-2(XI) chainCOL11A2
P13987CD59 glycoproteinCD59
P14138Endothelin-3EDN3
P14174Macrophage migration inhibitory factorMIF
P14207Folate receptor betaFOLR2
P14222Perforin-1PRF1
P14543Nidogen-1NID1
P14555Phospholipase A2, membrane associatedPLA2G2A
P14625EndoplasminHSP90B1
P14735Insulin-degrading enzymeIDE
P14778Interleukin-1 receptor type 1, soluble formIL1R1
P1478082 kDa matrix metalloproteinase-9MMP9
P15018Leukemia inhibitory factorLIF
P15085Carboxypeptidase A1CPA1
P15086Carboxypeptidase BCPB1
P15151Poliovirus receptorPVR
P15169Carboxypeptidase N catalytic chainCPN1
P15248Interleukin-9IL9
P15291N-acetyllactosamine synthaseB4GALT1
P15309PAPf39ACPP
P15328Folate receptor alphaFOLR1
P15374Ubiquitin carboxyl-terminal hydrolaseUCHL3
isozyme L3
P15502ElastinELN
P15509Granulocyte-macrophage colony-stimulatingCSF2RA
factor receptor subunit alpha
P15515Histatin-1HTN1
P15516His3-(31-51)-peptideHTN3
P15692Vascular endothelial growth factor AVEGFA
P15814Immunoglobulin lambda-like polypeptide 1IGLL1
P15907Beta-galactoside alpha-2,6-sialyltransferase 1ST6GAL1
P15941Mucin-1 subunit betaMUC1
P16035Metalloproteinase inhibitor 2TIMP2
P16112Aggrecan core protein 2ACAN
P16233Pancreatic triacylglycerol lipasePNLIP
P16442Histo-blood group ABO system transferaseABO
P16471Prolactin receptorPRLR
P16562Cysteine-rich secretory protein 2CRISP2
P16619C-C motif chemokine 3-like 1CCL3L1
P16860BNP(3-29)NPPB
P16870Carboxypeptidase ECPE
P16871Interleukin-7 receptor subunit alphaIL7R
P17213Bactericidal permeability-increasing proteinBPI
P17538Chymotrypsinogen BCTRB1
P17931Galectin-3LGALS3
P17936Insulin-like growth factor-binding protein 3 IGFBP3
P17948Vascular endothelial growth factor receptor 1FLT1
P18065Insulin-like growth factor-binding protein 2 IGFBP2
P18075Bone morphogenetic protein 7BMP7
P18428Lipopolysaccharide-binding proteinLBP
P18509PACAP-related peptideADCYAP1
P18510Interleukin-1 receptor antagonist proteinIL1RN
P18827Syndecan-1SDC1
P19021Peptidylglycine alpha-hydroxylatingPAM
monooxygenase
P19235Erythropoietin receptorEPOR
P19438Tumor necrosis factor-binding protein 1TNFRSF1A
P19652Alpha-1-acid glycoprotein 2ORM2
P19801Amiloride-sensitive amine oxidase [copper-ABP1
containing]
P19823Inter-alpha-trypsin inhibitor heavy chain H2 ITIH2
P19827Inter-alpha-trypsin inhibitor heavy chain H1 ITIH1
P19835Bile salt-activated lipaseCEL
P19875C-X-C motif chemokine 2CXCL2
P19876C-X-C motif chemokine 3CXCL3
P19883FollistatinFST
P19957ElafinPI3
P19961Alpha-amylase 2BAMY2B
P20061Transcobalamin-1TCN1
P20062Transcobalamin-2TCN2
P20142GastricsinPGC
P20155Serine protease inhibitor Kazal-type 2SPINK2
P20231Tryptase beta-2TPSB2
P20333Tumor necrosis factor receptor superfamilyTNFRSF1B
member 1B
P20366Substance PTAC1
P20382Melanin-concentrating hormonePMCH
P20396ThyroliberinTRH
P20742Pregnancy zone proteinPZP
P20774MimecanOGN
P20783Neurotrophin-3NTF3
P20800Endothelin-2EDN2
P20809Interleukin-11IL11
P20827Ephrin-A1EFNA1
P20849Collagen alpha-1(IX) chainCOL9A1
P20851C4b-binding protein beta chainC4BPB
P20908Collagen alpha-1(V) chainCOL5A1
P21128Poly(U)-specific endoribonucleaseENDOU
P21246PleiotrophinPTN
P21583Kit ligandKITLG
P21741MidkineMDK
P21754Zona pellucida sperm-binding protein 3ZP3
P21781Fibroblast growth factor 7FGF7
P21802Fibroblast growth factor receptor 2FGFR2
P21810BiglycanBGN
P21815Bone sialoprotein 2IBSP
P21860Receptor tyrosine-protein kinase erbB-3ERBB3
P21941Cartilage matrix proteinMATN1
P22003Bone morphogenetic protein 5BMP5
P22004Bone morphogenetic protein 6BMP6
P22079LactoperoxidaseLPO
P22105Tenascin-XTNXB
P22301Interleukin-10IL10
P22303AcetylcholinesteraseACHE
P22352Glutathione peroxidase 3GPX3
P22362C-C motif chemokine 1CCL1
P22455Fibroblast growth factor receptor 4FGFR4
P22466Galanin message-associated peptideGAL
P22692Insulin-like growth factor-binding protein 4 IGFBP4
P22749GranulysinGNLY
P22792Carboxypeptidase N subunit 2CPN2
P22891Vitamin K-dependent protein ZPROZ
P22894Neutrophil collagenaseMMP8
P23142Fibulin-1FBLN1
P23280Carbonic anhydrase 6CA6
P23352Anosmin-1KAL1
P23435Cerebellin-1CBLN1
P23560Brain-derived neurotrophic factorBDNF
P23582C-type natriuretic peptideNPPC
P23946ChymaseCMA1
P24043Laminin subunit alpha-2LAMA2
P24071Immunoglobulin alpha Fc receptorFCAR
P24347Stromelysin-3MMP11
P24387Corticotropin-releasing factor-binding proteinCRHBP
P24592Insulin-like growth factor-binding protein 6 IGFBP6
P24593Insulin-like growth factor-binding protein 5 IGFBP5
P24821TenascinTNC
P24855Deoxyribonuclease-1DNASE1
P25067Collagen alpha-2(VIII) chainCOL8A2
P25311Zinc-alpha-2-glycoproteinAZGP1
P25391Laminin subunit alpha-1LAMA1
P25445Tumor necrosis factor receptor superfamilyFAS
member 6
P25940Collagen alpha-3(V) chainCOL5A3
P25942Tumor necrosis factor receptor superfamilyCD40
member 5
P26022Pentraxin-related protein PTX3PTX3
P26927Hepatocyte growth factor-like protein betaMST1
chain
P27169Serum paraoxonase/arylesterase 1PON1
P27352Gastric intrinsic factorGIF
P27487Dipeptidyl peptidase 4 membrane formDPP4
P27539Embryonic growth/differentiation factor 1GDF1
P27658VastatinCOL8A1
P27797CalreticulinCALR
P27918ProperdinCFP
P28039Acyloxyacyl hydrolaseAOAH
P28300Protein-lysine 6-oxidaseLOX
P28325Cystatin-DCST5
P28799Granulin-1GRN
P29122Proprotein convertase subtilisin/kexin type 6PCSK6
P29279Connective tissue growth factorCTGF
P29320Ephrin type-A receptor 3EPHA3
P29400Collagen alpha-5(IV) chainCOL4A5
P29459Interleukin-12 subunit alphaIL12A
P29460Interleukin-12 subunit betaIL12B
P29508Serpin B3SERPINB3
P29622KallistatinSERPINA4
P29965CD40 ligand, soluble formCD40LG
P30990Neurotensin/neuromedin NNTS
P31025Lipocalin-1LCN1
P31151Protein S100-A7S100A7
P31371Fibroblast growth factor 9FGF9
P31431Syndecan-4SDC4
P3194714-3-3 protein sigmaSFN
P32455Interferon-induced guanylate-binding proteinGBP1
1
P32881Interferon alpha-8IFNA8
P34096Ribonuclease 4RNASE4
P34130Neurotrophin-4NTF4
P34820Bone morphogenetic protein 8BBMP8B
P35030Trypsin-3PRSS3
P35052Secreted glypican-1GPC1
P35070BetacellulinBTC
P35225Interleukin-13IL13
P35247Pulmonary surfactant-associated protein DSFTPD
P35318ADMADM
P35542Serum amyloid A-4 proteinSAA4
P35555Fibrillin-1FBN1
P35556Fibrillin-2FBN2
P35625Metalloproteinase inhibitor 3TIMP3
P35858Insulin-like growth factor-binding proteinIGFALS
complex acid labile subunit
P35916Vascular endothelial growth factor receptor 3FLT4
P35968Vascular endothelial growth factor receptor 2KDR
P36222Chitinase-3-like protein 1CHI3L1
P36952Serpin B5SERPINB5
P36955Pigment epithelium-derived factorSERPINF1
P36980Complement factor H-related protein 2CFHR2
P39059Collagen alpha-1(XV) chainCOL15A1
P39060Collagen alpha-1(XVIII) chainCOL18A1
P39877Calcium-dependent phospholipase A2PLA2G5
P39900Macrophage metalloelastaseMMP12
P39905Glial cell line-derived neurotrophic factorGDNF
P40225ThrombopoietinTHPO
P40967M-alphaPMEL
P41159LeptinLEP
P41221Protein Wnt-5aWNT5A
P41222Prostaglandin-H2 D-isomerasePTGDS
P41271Neuroblastoma suppressor of tumorigenicityNBL1
1
P41439Folate receptor gammaFOLR3
P42127Agouti-signaling proteinASIP
P42702Leukemia inhibitory factor receptorLIFR
P42830ENA-78(9-78)CXCL5
P43026Growth/differentiation factor 5GDF5
P43251BiotinidaseBTD
P43652AfaminAFM
P45452Collagenase 3MMP13
P47710Casoxin-DCSN1S1
P47929Galectin-7LGALS7B
P47972Neuronal pentraxin-2NPTX2
P47989Xanthine oxidaseXDH
P47992LymphotactinXCL1
P48023Tumor necrosis factor ligand superfamilyFASLG
member 6, membrane form
P48052Carboxypeptidase A2CPA2
P48061Stromal cell-derived factor 1CXCL12
P48304Lithostathine-1-betaREG1B
P48307Tissue factor pathway inhibitor 2TFPI2
P48357Leptin receptorLEPR
P48594Serpin B4SERPINB4
P48645Neuromedin-U-25NMU
P48740Mannan-binding lectin serine protease 1MASP1
P48745Protein NOV homologNOV
P48960CD97 antigen subunit betaCD97
P49223Kunitz-type protease inhibitor 3SPINT3
P49747Cartilage oligomeric matrix proteinCOMP
P49763Placenta growth factorPGF
P49765Vascular endothelial growth factor BVEGFB
P49767Vascular endothelial growth factor CVEGFC
P49771Fms-related tyrosine kinase 3 ligandFLT3LG
P49862Kallikrein-7KLK7
P49863Granzyme KGZMK
P49908Selenoprotein PSEPP1
P49913Antibacterial protein FALL-39CAMP
P50607Tubby protein homologTUB
P51124Granzyme MGZMM
P51512Matrix metalloproteinase-16MMP16
P51654Glypican-3GPC3
P51671EotaxinCCL11
P51884LumicanLUM
P51888ProlarginPRELP
P52798Ephrin-A4EFNA4
P52823Stanniocalcin-1STC1
P53420Collagen alpha-4(IV) chainCOL4A4
P53621Coatomer subunit alphaCOPA
P54108Cysteine-rich secretory protein 3CRISP3
P54315Pancreatic lipase-related protein 1PNLIPRP1
P54317Pancreatic lipase-related protein 2PNLIPRP2
P54793Arylsulfatase FARSF
P55000Secreted Ly-6/uPAR-related protein 1SLURP1
P55001Microfibrillar-associated protein 2MFAP2
P55056Apolipoprotein C-IVAPOC4
P55058Phospholipid transfer proteinPLTP
P55075Fibroblast growth factor 8FGF8
P55081Microfibrillar-associated protein 1MFAP1
P55083Microfibril-associated glycoprotein 4MFAP4
P55107Bone morphogenetic protein 3BGDF10
P55145Mesencephalic astrocyte-derivedMANF
neurotrophic factor
P55259Pancreatic secretory granule membraneGP2
major glycoprotein GP2
P55268Laminin subunit beta-2LAMB2
P55773CCL23(30-99)CCL23
P55774C-C motif chemokine 18CCL18
P55789FAD-linked sulfhydryl oxidase ALRGFER
P56703Proto-oncogene Wnt-3WNT3
P56704Protein Wnt-3aWNT3A
P56705Protein Wnt-4WNT4
P56706Protein Wnt-7bWNT7B
P56730NeurotrypsinPRSS12
P56851Epididymal secretory protein E3-betaEDDM3B
P56975Neuregulin-3NRG3
P58062Serine protease inhibitor Kazal-type 7SPINK7
P58215Lysyl oxidase homolog 3LOXL3
P58294Prokineticin-1PROK1
P58335Anthrax toxin receptor 2ANTXR2
P58397A disintegrin and metalloproteinase withADAMTS12
thrombospondin motifs 12
P58417Neurexophilin-1NXPH1
P58499Protein FAM3BFAM3B
P59510A disintegrin and metalloproteinase withADAMTS20
thrombospondin motifs 20
P59665Neutrophil defensin 1DEFA1B
P59666Neutrophil defensin 3DEFA3
P59796Glutathione peroxidase 6GPX6
P59826BPI fold-containing family B member 3BPIFB3
P59827BPI fold-containing family B member 4BPIFB4
P59861Beta-defensin 131DEFB131
P60022Beta-defensin 1DEFB1
P60153Inactive ribonuclease-like protein 9RNASE9
P60827Complement C1q tumor necrosis factor-C1QTNF8
related protein 8
P60852Zona pellucida sperm-binding protein 1ZP1
P60985Keratinocyte differentiation-associatedKRTDAP
protein
P61109Kidney androgen-regulated proteinKAP
P61278Somatostatin-14SST
P61366OsteocrinOSTN
P61626Lysozyme CLYZ
P61769Beta-2-microglobulinB2M
P61812Transforming growth factor beta-2TGFB2
P61916Epididymal secretory protein E1NPC2
P62502Epididymal-specific lipocalin-6LCN6
P62937Peptidyl-prolyl cis-trans isomerase APPIA
P67809Nuclease-sensitive element-binding protein 1 YBX1
P67812Signal peptidase complex catalytic subunitSEC11A
SEC11A
P78310Coxsackievirus and adenovirus receptorCXADR
P78333Secreted glypican-5GPC5
P78380Oxidized low-density lipoprotein receptor 1OLR1
P78423Processed fractalkineCX3CL1
P78509ReelinRELN
P78556CCL20(2-70)CCL20
P80075MCP-2(6-76)CCL8
P80098C-C motif chemokine 7CCL7
P80108Phosphatidylinositol-glycan-specificGPLD1
phospholipase D
P80162C-X-C motif chemokine 6CXCL6
P80188Neutrophil gelatinase-associated lipocalinLCN2
P80303Nucleobindin-2NUCB2
P80511CalciterminS100A12
P81172Hepcidin-25HAMP
P81277Prolactin-releasing peptidePRLH
P81534Beta-defensin 103DEFB103A
P81605DermcidinDCD
P82279Protein crumbs homolog 1CRB1
P82987ADAMTS-like protein 3ADAMTSL3
P83105Serine protease HTRA4HTRA4
P83110Serine protease HTRA3HTRA3
P83859Orexigenic neuropeptide QRFPQRFP
P98088Mucin-5ACMUC5AC
P98095Fibulin-2FBLN2
P98160Basement membrane-specific heparanHSPG2
sulfate proteoglycan core protein
P98173Protein FAM3AFAM3A
Q00604NorrinNDP
Q00796Sorbitol dehydrogenaseSORD
Q00887Pregnancy-specific beta-1-glycoprotein 9PSG9
Q00888Pregnancy-specific beta-1-glycoprotein 4PSG4
Q00889Pregnancy-specific beta-1-glycoprotein 6PSG6
Q01523HD5(56-94)DEFA5
Q01524Defensin-6DEFA6
Q01955Collagen alpha-3(IV) chainCOL4A3
Q02297Pro-neuregulin-1, membrane-bound isoformNRG1
Q02325Plasminogen-like protein BPLGLB1
Q02383Semenogelin-2SEMG2
Q02388Collagen alpha-1(VII) chainCOL7A1
Q02505Mucin-3AMUC3A
Q02509Otoconin-90OC90
Q02747GuanylinGUCA2A
Q02763Angiopoietin-1 receptorTEK
Q02817Mucin-2MUC2
Q02985Complement factor H-related protein 3CFHR3
Q03167Transforming growth factor beta receptorTGFBR3
type 3
Q03403Trefoil factor 2TFF2
Q03405Urokinase plasminogen activator surfacePLAUR
receptor
Q03591Complement factor H-related protein 1CFHR1
Q03692Collagen alpha-1(X) chainCOL10A1
Q04118Basic salivary proline-rich protein 3PRB3
Q04756Hepatocyte growth factor activator shortHGFAC
chain
Q04900Sialomucin core protein 24CD164
Q05315Eosinophil lysophospholipaseCLC
Q05707Collagen alpha-1(XIV) chainCOL14A1
Q05996Processed zona pellucida sperm-bindingZP2
protein 2
Q06033Inter-alpha-trypsin inhibitor heavy chain H3 ITIH3
Q06141Regenerating islet-derived protein 3-alphaREG3A
Q06828FibromodulinFMOD
Q07092Collagen alpha-1(XVI) chainCOL16A1
Q07325C-X-C motif chemokine 9CXCL9
Q07507DermatopontinDPT
Q075Z2Binder of sperm protein homolog 1BSPH1
Q07654Trefoil factor 3TFF3
Q07699Sodium channel subunit beta-1SCN1B
Q08345Epithelial discoidin domain-containingDDR1
receptor 1
Q08380Galectin-3-binding proteinLGALS3BP
Q08397Lysyl oxidase homolog 1LOXL1
Q08431LactadherinMFGE8
Q08629Testican-1SPOCK1
Q08648Sperm-associated antigen 11BSPAG11B
Q08830Fibrinogen-like protein 1FGL1
Q10471Polypeptide N-GALNT2
acetylgalactosaminyltransferase 2
Q10472Polypeptide N-GALNT1
acetylgalactosaminyltransferase 1
Q11201CMP-N-acetylneuraminate-beta-ST3GAL1
galactosamide-alpha-2,3-sialyltransferase 1
Q11203CMP-N-acetylneuraminate-beta-1,4-ST3GAL3
galactoside alpha-2,3-sialyltransferase
Q11206CMP-N-acetylneuraminate-beta-ST3GAL4
galactosamide-alpha-2,3-sialyltransferase 4
Q12794Hyaluronidase-1HYAL1
Q12805EGF-containing fibulin-like extracellularEFEMP1
matrix protein 1
Q12836Zona pellucida sperm-binding protein 4ZP4
Q12841Follistatin-related protein 1FSTL1
Q12904Aminoacyl tRNA synthase complex-AIMP1
interacting multifunctional protein 1
Q13018Soluble secretory phospholipase A2 receptorPLA2R1
Q13072B melanoma antigen 1BAGE
Q13093Platelet-activating factor acetylhydrolasePLA2G7
Q13103Secreted phosphoprotein 24SPP2
Q13162Peroxiredoxin-4PRDX4
Q13201Platelet glycoprotein Ia*MMRN1
Q13214Semaphorin-3BSEMA3B
Q13219Pappalysin-1PAPPA
Q13231Chitotriosidase-1CHIT1
Q13253NogginNOG
Q13261Interleukin-15 receptor subunit alphaIL15RA
Q13275Semaphorin-3FSEMA3F
Q13291Signaling lymphocytic activation moleculeSLAMF1
Q13316Dentin matrix acidic phosphoprotein 1DMP1
Q13361Microfibrillar-associated protein 5MFAP5
Q13410Butyrophilin subfamily 1 member A1BTN1A1
Q13421Mesothelin, cleaved formMSLN
Q13429Insulin-like growth factor IIGF-I
Q13443Disintegrin and metalloproteinase domain-ADAM9
containing protein 9
Q13519Neuropeptide 1PNOC
Q13751Laminin subunit beta-3LAMB3
Q13753Laminin subunit gamma-2LAMC2
Q13790Apolipoprotein FAPOF
Q13822EctonucleotideENPP2
pyrophosphatase/phosphodiesterase family
member 2
Q14031Collagen alpha-6(IV) chainCOL4A6
Q14050Collagen alpha-3(IX) chainCOL9A3
Q14055Collagen alpha-2(IX) chainCOL9A2
Q14112Nidogen-2NID2
Q14114Low-density lipoprotein receptor-relatedLRP8
protein 8
Q14118DystroglycanDAG1
Q14314FibroleukinFGL2
Q14393Growth arrest-specific protein 6GAS6
Q14406Chorionic somatomammotropin hormone-CSHL1
like 1
Q14507Epididymal secretory protein E3-alphaEDDM3A
Q14508WAP four-disulfide core domain protein 2WFDC2
Q14512Fibroblast growth factor-binding protein 1FGFBP1
Q14515SPARC-like protein 1SPARCL1
Q14520Hyaluronan-binding protein 2 27 kDa lightHABP2
chain
Q14563Semaphorin-3ASEMA3A
Q14623Indian hedgehog proteinIHH
Q14624Inter-alpha-trypsin inhibitor heavy chain H4ITIH4
Q14667UPF0378 protein KIAA0100KIAA0100
Q14703Membrane-bound transcription factor site-1MBTPS1
protease
Q14766Latent-transforming growth factor beta-LTBP1
binding protein 1
Q14767Latent-transforming growth factor beta-LTBP2
binding protein 2
Q14773Intercellular adhesion molecule 4ICAM4
Q14993Collagen alpha-1(XIX) chainCOL19A1
Q14CN2Calcium-activated chloride channel regulatorCLCA4
4, 110 kDa form
Q15046Lysine-tRNA ligaseKARS
Q15063PeriostinPOSTN
Q15109Advanced glycosylation end product-specific AGER
receptor
Q15113Procollagen C-endopeptidase enhancer 1PCOLCE
Q15166Serum paraoxonase/lactonase 3PON3
Q15195Plasminogen-like protein APLGLA
Q15198Platelet-derived growth factor receptor-like PDGFRL
protein
Q15223Poliovirus receptor-related protein 1PVRL1
Q15238Pregnancy-specific beta-1-glycoprotein 5PSG5
Q15363Transmembrane emp24 domain-containingTMED2
protein 2
Q15375Ephrin type-A receptor 7EPHA7
Q15389Angiopoietin-1ANGPT1
Q15465Sonic hedgehog proteinSHH
Q15485Ficolin-2FCN2
Q15517CorneodesmosinCDSN
Q15582Transforming growth factor-beta-inducedTGFBI
protein ig-h3
Q15661Tryptase alpha/beta-1TPSAB1
Q15726MetastinKISS1
Q15782Chitinase-3-like protein 2CHI3L2
Q15828Cystatin-MCST6
Q15846Clusterin-like protein 1CLUL1
Q15848AdiponectinADIPOQ
Q16206Protein disulfide-thiol oxidoreductaseENOX2
Q16270Insulin-like growth factor-binding protein 7IGFBP7
Q16363Laminin subunit alpha-4LAMA4
Q16378Proline-rich protein 4PRR4
Q16557Pregnancy-specific beta-1-glycoprotein 3PSG3
Q16568CART(42-89)CARTPT
Q16610Extracellular matrix protein 1ECM1
Q16619Cardiotrophin-1CTF1
Q16623Syntaxin-1ASTX1A
Q16627HCC-1(9-74)CCL14
Q16651Prostasin light chainPRSS8
Q16661Guanylate cyclase C-activating peptide 2GUCA2B
Q16663CCL15(29-92)CCL15
Q16674Melanoma-derived growth regulatory proteinMIA
Q16769Glutaminyl-peptide cyclotransferaseQPCT
Q16787Laminin subunit alpha-3LAMA3
Q16842CMP-N-acetylneuraminate-beta-ST3GAL2
galactosamide-alpha-2,3-sialyltransferase 2
Q17RR3Pancreatic lipase-related protein 3PNLIPRP3
Q17RW2Collagen alpha-1(XXIV) chainCOL24A1
Q17RY6Lymphocyte antigen 6KLY6K
Q1L6U9Prostate-associated microseminoproteinMSMP
Q1W4C9Serine protease inhibitor Kazal-type 13SPINK13
Q1ZYL8Izumo sperm-egg fusion protein 4IZUMO4
Q29960HLA class I histocompatibility antigen, HLA-C
Cw-16 alpha chain
Q2I0M5R-spondin-4RSPO4
Q2L4Q9Serine protease 53PRSS53
Q2MKA7R-spondin-1RSPO1
Q2MV58Tectonic-1TCTN1
Q2TAL6BrorinVWC2
Q2UY09Collagen alpha-1(XXVIII) chainCOL28A1
Q2VPA4Complement component receptor 1-likeCR1L
protein
Q2WEN9Carcinoembryonic antigen-related cellCEACAM16
adhesion molecule 16
Q30KP8Beta-defensin 136DEFB136
Q30KP9Beta-defensin 135DEFB135
Q30KQ1Beta-defensin 133DEFB133
Q30KQ2Beta-defensin 130DEFB130
Q30KQ4Beta-defensin 116DEFB116
Q30KQ5Beta-defensin 115DEFB115
Q30KQ6Beta-defensin 114DEFB114
Q30KQ7Beta-defensin 113DEFB113
Q30KQ8Beta-defensin 112DEFB112
Q30KQ9Beta-defensin 110DEFB110
Q30KR1Beta-defensin 109DEFB109P1
Q32P28Prolyl 3-hydroxylase 1LEPRE1
Q3B7J2Glucose-fructose oxidoreductase domain-GFOD2
containing protein 2
Q3SY79Protein WntWNT3A
Q3T906N-acetylglucosamine-1-phosphotransferaseGNPTAB
subunits alpha/beta
Q495T6Membrane metallo-endopeptidase-like 1MMEL1
Q49AH0Cerebral dopamine neurotrophic factorCDNF
Q4G0G5Secretoglobin family 2B member 2SCGB2B2
Q4G0M1Protein FAM132BFAM132B
Q4LDE5Sushi, von Willebrand factor type A, EGF SVEP1
and pentraxin domain-containing protein 1
Q4QY38Beta-defensin 134DEFB134
Q4VAJ4Protein WntWNT10B
Q4W5P6Protein TMEM155TMEM155
Q4ZHG4Fibronectin type III domain-containingFNDC1
protein 1
Q53H76Phospholipase A1 member APLA1A
Q53RD9Fibulin-7FBLN7
Q53S33BolA-like protein 3BOLA3
Q5BLP8Neuropeptide-like protein C4orf48C4orf48
Q5DT21Serine protease inhibitor Kazal-type 9SPINK9
Q5EBL8PDZ domain-containing protein 11PDZD11
Q5FYB0Arylsulfatase JARSJ
Q5FYB1Arylsulfatase IARSI
Q5GAN3Ribonuclease-like protein 13RNASE13
Q5GAN4Ribonuclease-like protein 12RNASE12
Q5GAN6Ribonuclease-like protein 10RNASE10
Q5GFL6von Willebrand factor A domain-containing VWA2
protein 2
Q5H8A3Neuromedin-SNMS
Q5H8C1FRAS1-related extracellular matrix protein 1FREM1
Q5IJ48Protein crumbs homolog 2CRB2
Q5J5C9Beta-defensin 121DEFB121
Q5JS37NHL repeat-containing protein 3NHLRC3
Q5JTB6Placenta-specific protein 9PLAC9
Q5JU69Torsin-2ATOR2A
Q5JXM2Methyltransferase-like protein 24METTL24
Q5JZY3Ephrin type-A receptor 10EPHA10
Q5K4E3Polyserase-2PRSS36
Q5SRR4Lymphocyte antigen 6 complex locus proteinLY6G5C
G5c
Q5T1H1Protein eyes shut homologEYS
Q5T4F7Secreted frizzled-related protein 5SFRP5
Q5T4W7ArteminARTN
Q5T7M4Protein FAM132AFAM132A
Q5TEH8Protein WntWNT2B
Q5TIE3von Willebrand factor A domain-containingVWA5B1
protein 5B1
Q5UCC4ER membrane protein complex subunit 10EMC10
Q5VST6Abhydrolase domain-containing proteinFAM108B1
FAM108B1
Q5VTL7Fibronectin type III domain-containingFNDC7
protein 7
Q5VUM1UPF0369 protein C6orf57C6orf57
Q5VV43Dyslexia-associated protein KIAA0319KIAA0319
Q5VWW1Complement C1q-like protein 3C1QL3
Q5VXI9Lipase member NLIPN
Q5VXJ0Lipase member KLIPK
Q5VXM1CUB domain-containing protein 2CDCP2
Q5VYX0RenalaseRNLS
Q5VYY2Lipase member MLIPM
Q5W186Cystatin-9CST9
Q5W5W9Regulated endocrine-specific protein 18RESP18
Q5XG92Carboxylesterase 4ACES4A
Q63HQ2PikachurinEGFLAM
Q641Q3Meteorin-like proteinMETRNL
Q66K79Carboxypeptidase ZCPZ
Q685J3Mucin-17MUC17
Q68BL7Olfactomedin-like protein 2AOLFML2A
Q68BL8Olfactomedin-like protein 2BOLFML2B
Q68DV7E3 ubiquitin-protein ligase RNF43RNF43
Q6B9Z1Insulin growth factor-like family member 4IGFL4
Q6BAA4Fc receptor-like BFCRLB
Q6E0U4DermokineDMKN
Q6EMK4VasorinVASN
Q6FHJ7Secreted frizzled-related protein 4SFRP4
Q6GPI1Chymotrypsin B2 chain BCTRB2
Q6GTS8Probable carboxypeptidase PM20D1PM20D1
Q6H9L7Isthmin-2ISM2
Q6IE36Ovostatin homolog 2OVOS2
Q6IE37Ovostatin homolog 1OVOS1
Q6IE38Serine protease inhibitor Kazal-type 14SPINK14
Q61SS4Leukocyte-associated immunoglobulin-likeLAIR2
receptor 2
Q6JVE5Epididymal-specific lipocalin-12LCN12
Q6JVE6Epididymal-specific lipocalin-10LCN10
Q6JVE9Epididymal-specific lipocalin-8LCN8
Q6KF10Growth/differentiation factor 6GDF6
Q6MZW2Follistatin-related protein 4FSTL4
Q6NSX1Coiled-coil domain-containing protein 70CCDC70
Q6NT32Carboxylesterase 5ACES5A
Q6NT52Choriogonadotropin subunit beta variant 2 CGB2
Q6NUI6Chondroadherin-like proteinCHADL
Q6NUJ1Saposin A-likePSAPL1
Q6P093Arylacetamide deacetylase-like 2AADACL2
Q6P4A8Phospholipase B-like 1PLBD1
Q6P5S2UPF0762 protein C6orf58C6orf58
Q6P988Protein notum homologNOTUM
Q6PCB0von Willebrand factor A domain-containing VWA1
protein 1
Q6PDA7Sperm-associated antigen 11ASPAG11A
Q6PEW0Inactive serine protease 54PRSS54
Q6PEZ8Podocan-like protein 1PODNL1
Q6PKH6Dehydrogenase/reductase SDR familyDHRS4L2
member 4-like 2
Q6Q788Apolipoprotein A-VAPOA5
Q6SPF0AtherinSAMD1
Q6UDR6Kunitz-type protease inhibitor 4SPINT4
Q6URK8Testis, prostate and placenta-expressedTEPP
protein
Q6UW01Cerebellin-3CBLN3
Q6UW10Surfactant-associated protein 2SFTA2
Q6UW15Regenerating islet-derived protein 3-gammaREG3G
Q6UW32Insulin growth factor-like family member 1IGFL1
Q6UW78UPF0723 protein C11orf83C11orf83
Q6UW88EpigenEPGN
Q6UWE3Colipase-like protein 2CLPSL2
Q6UWF7NXPE family member 4NXPE4
Q6UWF9Protein FAM180AFAM180A
Q6UWM5GLIPR1-like protein 1GLIPR1L1
Q6UWN8Serine protease inhibitor Kazal-type 6SPINK6
Q6UWP2Dehydrogenase/reductase SDR familyDHRS11
member 11
Q6UWP8SuprabasinSBSN
Q6UWQ5Lysozyme-like protein 1LYZL1
Q6UWQ7Insulin growth factor-like family member 2IGFL2
Q6UWR7EctonucleotideENPP6
pyrophosphatase/phosphodiesterase family
member 6 soluble form
Q6UWT2AdropinENHO
Q6UWU2Beta-galactosidase-1-like proteinGLB1L
Q6UWW0Lipocalin-15LCN15
Q6UWX4HHIP-like protein 2HHIPL2
Q6UWY0Arylsulfatase KARSK
Q6UWY2Serine protease 57PRSS57
Q6UWY5Olfactomedin-like protein 1OLFML1
Q6UX06Olfactomedin-4OLFM4
Q6UX07Dehydrogenase/reductase SDR familyDHRS13
member 13
Q6UX39AmelotinAMTN
Q6UX46Protein FAM150BFAM150B
Q6UX73UPF0764 protein C16orf89C16orf89
Q6UXB0Protein FAM131AFAM131A
Q6UXB1Insulin growth factor-like family member 3IGFL3
Q6UXB2VEGF co-regulated chemokine 1CXCL17
Q6UXF7C-type lectin domain family 18 member BCLEC18B
Q6UXH0Hepatocellular carcinoma-associated proteinC19orf80
TD26
Q6UXH1Cysteine-rich with EGF-like domain protein 2CRELD2
Q6UXH8Collagen and calcium-binding EGF domain-CCBE1
containing protein 1
Q6UXH9Inactive serine protease PAMR1PAMR1
Q6UXI7VitrinVIT
Q6UXI9NephronectinNPNT
Q6UXN2Trem-like transcript 4 proteinTREML4
Q6UXS0C-type lectin domain family 19 member ACLEC19A
Q6UXT8Protein FAM150AFAM150A
Q6UXT9Abhydrolase domain-containing protein 15ABHD15
Q6UXV4Apolipoprotein O-likeAPOOL
Q6UXX5Inter-alpha-trypsin inhibitor heavy chain H6ITIH6
Q6UXX9R-spondin-2RSPO2
Q6UY14ADAMTS-like protein 4ADAMTSL4
Q6UY27Prostate and testis expressed protein 2PATE2
Q6W4X9Mucin-6MUC6
Q6WN34Chord in-like protein 2CHRDL2
Q6WRI0Immunoglobulin superfamily member 10IGSF10
Q6X4U4Sclerostin domain-containing protein 1SOSTDC1
Q6X784Zona pellucida-binding protein 2ZPBP2
Q6XE38Secretoglobin family 1D member 4SCGB1D4
Q6XPR3RepetinRPTN
Q6XZB0Lipase member ILIPI
Q6ZMM2ADAMTS-like protein 5ADAMTSL5
Q6ZMP0Thrombospondin type-1 domain-containingTHSD4
protein 4
Q6ZNF0Iron/zinc purple acid phosphatase-likePAPL
protein
Q6ZRI0OtogelinOTOG
Q6ZRP7Sulfhydryl oxidase 2QSOX2
Q6ZWJ8Kielin/chordin-like proteinKCP
Q75N90Fibrillin-3FBN3
Q765I0Urotensin-2BUTS2D
Q76B58Protein FAM5CFAM5C
Q76LX8A disintegrin and metalloproteinase withADAMTS13
thrombospondin motifs 13
Q76M96Coiled-coil domain-containing protein 80CCDC80
Q7L1S5Carbohydrate sulfotransferase 9CHST9
Q7L513Fc receptor-like AFCRLA
Q7L8A9Vasohibin-1VASH1
Q7RTM1Otopetrin-1OTOP1
Q7RTW8OtoancorinOTOA
Q7RTY5Serine protease 48PRSS48
Q7RTY7Ovochymase-1OVCH1
Q7RTZ1Ovochymase-2OVCH2
Q7Z304MAM domain-containing protein 2MAMDC2
Q7Z3S9Notch homolog 2 N-terminal-like proteinNOTCH2NL
Q7Z4H4Intermedin-shortADM2
Q7Z4P5Growth/differentiation factor 7GDF7
Q7Z4R8UPF0669 protein C6orf120C6orf120
Q7Z4W2Lysozyme-like protein 2LYZL2
Q7Z5A4Serine protease 42PRSS42
Q7Z5A7Protein FAM19A5FAM19A5
Q7Z5A8Protein FAM19A3FAM19A3
Q7Z5A9Protein FAM19A1FAM19A1
Q7Z5J1Hydroxysteroid 11-beta-dehydrogenase 1-likeHSD11B1L
protein
Q7Z5L0Vitelline membrane outer layer protein 1VMO1
homolog
Q7Z5L3Complement C1q-like protein 2C1QL2
Q7Z5L7PodocanPODN
Q7Z5P417-beta-hydroxysteroid dehydrogenase 13HSD17B13
Q7Z5P9Mucin-19MUC19
Q7Z5Y6Bone morphogenetic protein 8ABMP8A
Q7Z7B7Beta-defensin 132DEFB132
Q7Z7B8Beta-defensin 128DEFB128
Q7Z7C8Transcription initiation factor TFIID subunit 8TAF8
Q7Z7H5Transmembrane emp24 domain-containingTMED4
protein 4
Q86SG7Lysozyme g-like protein 2LYG2
Q86SI9Protein CEIC5orf38
Q86TE4Leucine zipper protein 2LUZP2
Q86TH1ADAMTS-like protein 2ADAMTSL2
Q86U17Serpin A11SERPINA11
Q86UU9Endokinin-ATAC4
Q86UW8Hyaluronan and proteoglycan link protein 4HAPLN4
Q86UX2Inter-alpha-trypsin inhibitor heavy chain H5 ITIH5
Q86V24Adiponectin receptor protein 2ADIPOR2
Q86VB7Soluble CD163CD163
Q86VR8Four-jointed box protein 1FJX1
Q86WD7Serpin A9SERPINA9
Q86WN2Interferon epsilonIFNE
Q86WS3Placenta-specific 1-like proteinPLAC1L
Q86X52Chondroitin sulfate synthase 1CHSY1
Q86XP6Gastrokine-2GKN2
Q86XS5Angiopoietin-related protein 5ANGPTL5
Q86Y27B melanoma antigen 5BAGE5
Q86Y28B melanoma antigen 4BAGE4
Q86Y29B melanoma antigen 3BAGE3
Q86Y30B melanoma antigen 2BAGE2
Q86Y38Xylosyltransferase 1XYLT1
Q86Y78Ly6/PLAUR domain-containing protein 6LYPD6
Q86YD3Transmembrane protein 25TMEM25
Q86YJ6Threonine synthase-like 2THNSL2
Q86YW7Glycoprotein hormone beta-5GPHB5
Q86Z23Complement C1q-like protein 4C1QL4
Q8IU57Interleukin-28 receptor subunit alphaIL28RA
Q8IUA0WAP four-disulfide core domain protein 8WFDC8
Q8IUB2WAP four-disulfide core domain protein 3WFDC3
Q8IUB3Protein WFDC10BWFDC10B
Q8IUB5WAP four-disulfide core domain protein 13WFDC13
Q8IUH2Protein CREG2CREG2
Q8IUK5Plexin domain-containing protein 1PLXDC1
Q8IUL8Cartilage intermediate layer protein 2 C2CILP2
Q8IUX7Adipocyte enhancer-binding protein 1AEBP1
Q8IUX8Epidermal growth factor-like protein 6EGFL6
Q8IVL8Carboxypeptidase OCPO
Q8IVN8Somatomedin-B and thrombospondin type-1SBSPON
domain-containing protein
Q8IVW8Protein spinster homolog 2SPNS2
Q8IW75Serpin A12SERPINA12
Q8IW92Beta-galactosidase-1-like protein 2GLB1L2
Q8IWL1Pulmonary surfactant-associated protein A2SFTPA2
Q8IWL2Pulmonary surfactant-associated protein A1SFTPA1
Q8IWV2Contactin-4CNTN4
Q8IWY4Signal peptide, CUB and EGF-like domain-SCUBE1
containing protein 1
Q8IX30Signal peptide, CUB and EGF-like domain-SCUBE3
containing protein 3
Q8IXA5Sperm acrosome membrane-associatedSPACA3
protein 3, membrane form
Q8IXB1DnaJ homolog subfamily C member 10DNAJC10
Q8IXL6Extracellular serine/threonine protein kinaseFAM20C
Fam20C
Q8IYD9Lung adenoma susceptibility protein 2LAS2
Q8IYP2Serine protease 58PRSS58
Q8IYS5Osteoclast-associated immunoglobulin-likeOSCAR
receptor
Q8IZC6Collagen alpha-1(XXVII) chainCOL27A1
Q8IZJ3C3 and PZP-like alpha-2-macroglobulinCPAMD8
domain-containing protein 8
Q8IZN7Beta-defensin 107DEFB107B
Q8N0V4Leucine-rich repeat LGI family member 2LGI2
Q8N104Beta-defensin 106DEFB106B
Q8N119Matrix metalloproteinase-21MMP21
Q8N129Protein canopy homolog 4CNPY4
Q8N135Leucine-rich repeat LGI family member 4LGI4
Q8N145Leucine-rich repeat LGI family member 3LGI3
Q8N158Glypican-2GPC2
Q8N1E2Lysozyme g-like protein 1LYG1
Q8N2E2von Willebrand factor D and EGF domain-VWDE
containing protein
Q8N2E6ProsalusinTOR2A
Q8N2S1Latent-transforming growth factor beta-LTBP4
binding protein 4
Q8N302Angiogenic factor with G patch and FHAAGGF1
domains 1
Q8N307Mucin-20MUC20
Q8N323NXPE family member 1NXPE1
Q8N387Mucin-15MUC15
Q8N3Z0Inactive serine protease 35PRSS35
Q8N436Inactive carboxypeptidase-like protein X2 CPXM2
Q8N474Secreted frizzled-related protein 1SFRP1
Q8N475Follistatin-related protein 5FSTL5
Q8N4F0BPI fold-containing family B member 2BPIFB2
Q8N4T0Carboxypeptidase A6CPA6
Q8N5W8Protein FAM24BFAM24B
Q8N687Beta-defensin 125DEFB125
Q8N688Beta-defensin 123DEFB123
Q8N690Beta-defensin 119DEFB119
Q8N6C5Immunoglobulin superfamily member 1IGSF1
Q8N6C8Leukocyte immunoglobulin-like receptorLILRA3
subfamily A member 3
Q8N6G6ADAMTS-like protein 1ADAMTSL1
Q8N6Y2Leucine-rich repeat-containing protein 17LRRC17
Q8N729Neuropeptide W-23NPW
Q8N8U9BMP-binding endothelial regulator proteinBMPER
Q8N907DAN domain family member 5DAND5
Q8NAT1Glycosyltransferase-like domain-containingGTDC2
protein 2
Q8NAU1Fibronectin type III domain-containingFNDC5
protein 5
Q8NB37Parkinson disease 7 domain-containingPDDC1
protein 1
Q8NBI3DraxinDRAXIN
Q8NBM8Prenylcysteine oxidase-likePCYOX1L
Q8NBP7Proprotein convertase subtilisin/kexin type 9PCSK9
Q8NBQ5Estradiol 17-beta-dehydrogenase 11HSD17B11
Q8NBV8Synaptotagmin-8SYT8
Q8NCC3Group XV phospholipase A2PLA2G15
Q8NCF0C-type lectin domain family 18 member CCLEC18C
Q8NCW5NAD(P)H-hydrate epimeraseAPOA1BP
Q8NDA2Hemicentin-2HMCN2
Q8NDX9Lymphocyte antigen 6 complex locus proteinLY6G5B
G5b
Q8NDZ4Deleted in autism protein 1C3orf58
Q8NEB7Acrosin-binding proteinACRBP
Q8NES8Beta-defensin 124DEFB124
Q8NET1Beta-defensin 108BDEFB108B
Q8NEX5Protein WFDC9WFDC9
Q8NEX6Protein WFDC11WFDC11
Q8NF86Serine protease 33PRSS33
Q8NFM7Interleukin-17 receptor DIL17RD
Q8NFQ5BPI fold-containing family B member 6BPIFB6
Q8NFQ6BPI fold-containing family C proteinBPIFC
Q8NFU4Follicular dendritic cell secreted peptideFDCSP
Q8NFW1Collagen alpha-1(XXII) chainCOL22A1
Q8NG35Beta-defensin 105DEFB105B
Q8NG41Neuropeptide B-23NPB
Q8NHW6OtospiralinOTOS
Q8NI99Angiopoietin-related protein 6ANGPTL6
Q8TAA1Probable ribonuclease 11RNASE11
Q8TAG5V-set and transmembrane domain-containingVSTM2A
protein 2A
Q8TAL6Fin bud initiation factor homologFIBIN
Q8TAT2Fibroblast growth factor-binding protein 3FGFBP3
Q8TAX7Mucin-7MUC7
Q8TB22Spermatogenesis-associated protein 20SPATA20
Q8TB73Protein NDNFNDNF
Q8TB96T-cell immunomodulatory proteinITFG1
Q8TC92Protein disulfide-thiol oxidoreductaseENOX1
Q8TCV5WAP four-disulfide core domain protein 5WFDC5
Q8TD06Anterior gradient protein 3 homologAGR3
Q8TD33Secretoglobin family 1C member 1SCGB1C1
Q8TD46Cell surface glycoprotein CD200 receptor 1CD200R1
Q8TDE3Ribonuclease 8RNASE8
Q8TDF5Neuropilin and tolloid-like protein 1NETO1
Q8TDL5BPI fold-containing family B member 1BPIFB1
Q8TE56A disintegrin and metalloproteinase withADAMTS17
thrombospondin motifs 17
Q8TE57A disintegrin and metalloproteinase withADAMTS16
thrombospondin motifs 16
Q8TE58A disintegrin and metalloproteinase withADAMTS15
thrombospondin motifs 15
Q8TE59A disintegrin and metalloproteinase withADAMTS19
thrombospondin motifs 19
Q8TE60A disintegrin and metalloproteinase withADAMTS18
thrombospondin motifs 18
Q8TE99Acid phosphatase-like protein 2ACPL2
Q8TER0Sushi, nidogen and EGF-like domain-SNED1
containing protein 1
Q8TEU8WAP, kazal, immunoglobulin, kunitz and WFIKKN2
NTR domain-containing protein 2
Q8WTQ1Beta-defensin 104DEFB104B
Q8WTR8Netrin-5NTN5
Q8WTU2Scavenger receptor cysteine-rich domain-SRCRB4D
containing group B protein
Q8WU66Protein TSPEARTSPEAR
Q8WUA8TsukushinTSKU
Q8WUF8Protein FAM172AFAM172A
Q8WUJ1NeuferricinCYB5D2
Q8WUY1UPF0670 protein THEM6THEM6
Q8WVN6Secreted and transmembrane protein 1SECTM1
Q8WVQ1Soluble calcium-activated nucleotidase 1CANT1
Q8WWA0Intelectin-1ITLN1
Q8WWG1Neuregulin-4NRG4
Q8WWQ2Inactive heparanase-2HPSE2
Q8WWU7Intelectin-2ITLN2
Q8WWY7WAP four-disulfide core domain protein 12WFDC12
Q8WWY8Lipase member HLIPH
Q8WWZ8Oncoprotein-induced transcript 3 proteinOIT3
Q8WX39Epididymal-specific lipocalin-9LCN9
Q8WXA2Prostate and testis expressed protein 1PATE1
Q8WXD2Secretogranin-3SCG3
Q8WXF3Relaxin-3 A chainRLN3
Q8WXI7Mucin-16MUC16
Q8WXQ8Carboxypeptidase A5CPA5
Q8WXS8A disintegrin and metalloproteinase withADAMTS14
thrombospondin motifs 14
Q92484Acid sphingomyelinase-likeSMPDL3A
phosphodiesterase 3a
Q92485Acid sphingomyelinase-likeSMPDL3B
phosphodiesterase 3b
Q92496Complement factor H-related protein 4CFHR4
Q92520Protein FAM3CFAM3C
Q92563Testican-2SPOCK2
Q92583C-C motif chemokine 17CCL17
Q92626Peroxidasin homologPXDN
Q92743Serine protease HTRA1HTRA1
Q92752Tenascin-RTNR
Q92765Secreted frizzled-related protein 3FRZB
Q92819Hyaluronan synthase 2HAS2
Q92820Gamma-glutamyl hydrolaseGGH
Q92824Proprotein convertase subtilisin/kexin type 5PCSK5
Q92832Protein kinase C-binding protein NELL1NELL1
Q92838Ectodysplasin-A, membrane formEDA
Q92874Deoxyribonuclease-1-like 2DNASE1L2
Q92876Kallikrein-6KLK6
Q92913Fibroblast growth factor 13FGF13
Q92954Proteoglycan 4 C-terminal partPRG4
Q93038Tumor necrosis factor receptor superfamilyTNFRSF25
member 25
Q93091Ribonuclease K6RNASE6
Q93097Protein Wnt-2bWNT2B
Q93098Protein Wnt-8bWNT8B
Q95460Major histocompatibility complex class I-MR1
related gene protein
Q969D9Thymic stromal lymphopoietinTSLP
Q969E1Liver-expressed antimicrobial peptide 2LEAP2
Q969H8UPF0556 protein C19orf10C19orf10
Q969Y0NXPE family member 3NXPE3
Q96A54Adiponectin receptor protein 1ADIPOR1
Q96A83Collagen alpha-1(XXVI) chainEMID2
Q96A84EMI domain-containing protein 1EMID1
Q96A98Tuberoinfundibular peptide of 39 residuesPTH2
Q96A99Pentraxin-4PTX4
Q96BH3Epididymal sperm-binding protein 1ELSPBP1
Q96I3Q1Protein FAM3DFAM3D
Q96CG8Collagen triple helix repeat-containingCTHRC1
protein 1
Q96DA0Zymogen granule protein 16 homolog BZG16B
Q96DN2von Willebrand factor C and EGF domain-VWCE
containing protein
Q96DR5BPI fold-containing family A member 2BPIFA2
Q96DR8Mucin-like protein 1MUCL1
Q96DX4RING finger and SPRY domain-containingRSPRY1
protein 1
Q96EE4Coiled-coil domain-containing protein 126CCDC126
Q96GS6Abhydrolase domain-containing proteinFAM108A1
FAM108A1
Q96GW7Brevican core proteinBCAN
Q96HF1Secreted frizzled-related protein 2SFRP2
Q96I82Kazal-type serine protease inhibitor domain-KAZALD1
containing protein 1
Q96ID5Immunoglobulin superfamily member 21IGSF21
Q96II8Leucine-rich repeat and calponin homologyLRCH3
domain-containing protein 3
Q96IY4Carboxypeptidase B2CPB2
Q96JB6Lysyl oxidase homolog 4LOXL4
Q96JK4HHIP-like protein 1HHIPL1
Q96KN2Beta-Ala-His dipeptidaseCNDP1
Q96KW9Protein SPACA7SPACA7
Q96KX0Lysozyme-like protein 4LYZL4
Q96L15Ecto-ADP-ribosyltransferase 5ART5
Q96LB8Peptidoglycan recognition protein 4PGLYRP4
Q96LB9Peptidoglycan recognition protein 3PGLYRP3
Q96LC7Sialic acid-binding Ig-like lectin 10SIGLEC10
Q96LR4Protein FAM19A4FAM19A4
Q96MK3Protein FAM20AFAM20A
Q96MS3Glycosyltransferase 1 domain-containingGLT1D1
protein 1
Q96NY8Processed poliovirus receptor-related proteinPVRL4
4
Q96NZ8WAP, kazal, immunoglobulin, kunitz and WFIKKN1
NTR domain-containing protein 1
Q96NZ9Proline-rich acidic protein 1PRAP1
Q96P44Collagen alpha-1(XXI) chainCOL21A1
Q96PB7Noelin-3OLFM3
Q96PC5Melanoma inhibitory activity protein 2MIA2
Q96PD5N-acetylmuramoyl-L-alanine amidasePGLYRP2
Q96PH6Beta-defensin 118DEFB118
Q96PL1Secretoglobin family 3A member 2SCGB3A2
Q96PL2Beta-tectorinTECTB
Q96QH8Sperm acrosome-associated protein 5SPACA5
Q96QR1Secretoglobin family 3A member 1SCGB3A1
Q96QU1Protocadherin-15PCDH15
Q96QV1Hedgehog-interacting proteinHHIP
Q96RW7Hemicentin-1HMCN1
Q96S42Nodal homologNODAL
Q96S86Hyaluronan and proteoglycan link protein 3HAPLN3
Q96SL4Glutathione peroxidase 7GPX7
Q96SM3Probable carboxypeptidase X1CPXM1
Q96T91Glycoprotein hormone alpha-2GPHA2
Q99062Granulocyte colony-stimulating factorCSF3R
receptor
Q99102Mucin-4 alpha chainMUC4
Q99217Amelogenin, X isoformAMELX
Q99218Amelogenin, Y isoformAMELY
Q99435Protein kinase C-binding protein NELL2NELL2
Q99470Stromal cell-derived factor 2SDF2
Q99542Matrix metalloproteinase-19MMP19
Q99574NeuroserpinSERPINI1
Q99584Protein S100-A13S100A13
Q99616C-C motif chemokine 13CCL13
Q99645EpiphycanEPYC
Q99674Cell growth regulator with EF hand domainCGREF1
protein 1
Q99715Collagen alpha-1(XII) chainCOL12A1
Q99727Metalloproteinase inhibitor 4TIMP4
Q99731C-C motif chemokine 19CCL19
Q99748NeurturinNRTN
Q99935Proline-rich protein 1PROL1
Q99942E3 ubiquitin-protein ligase RNF5RNF5
Q99944Epidermal growth factor-like protein 8EGFL8
Q99954Submaxillary gland androgen-regulatedSMR3A
protein 3A
Q99969Retinoic acid receptor responder protein 2RARRES2
Q99972MyocilinMYOC
Q99983OsteomodulinOMD
Q99985Semaphorin-3CSEMA3C
Q99988Growth/differentiation factor 15GDF15
Q9BPW4Apolipoprotein L4APOL4
Q9BQ08Resistin-like betaRETNLB
Q9BQ16Testican-3SPOCK3
Q9BQ51Programmed cell death 1 ligand 2PDCD1LG2
Q9BQB4SclerostinSOST
Q9BQI4Coiled-coil domain-containing protein 3CCDC3
Q9BQP9BPI fold-containing family A member 3BPIFA3
Q9BQR3Serine protease 27PRSS27
Q9BQY6WAP four-disulfide core domain protein 6WFDC6
Q9BRR6ADP-dependent glucokinaseADPGK
Q9BS86Zona pellucida-binding protein 1ZPBP
Q9BSG0Protease-associated domain-containingPRADC1
protein 1
Q9BSG5RetbindinRTBDN
Q9BT30Probable alpha-ketoglutarate-dependentALKBH7
dioxygenase ABH7
Q9BT56SpexinC12orf39
Q9BT67NEDD4 family-interacting protein 1NDFIP1
Q9BTY2Plasma alpha-L-fucosidaseFUCA2
Q9BU40Chordin-like protein 1CHRDL1
Q9BUD6Spondin-2SPON2
Q9BUN1Protein MENTMENT
Q9BUR5Apolipoprotein OAPOO
Q9BV94ER degradation-enhancing alpha-EDEM2
mannosidase-like 2
Q9BWP8Collectin-11COLEC11
Q9BWS9Chitinase domain-containing protein 1CHID1
Q9BX67Junctional adhesion molecule CJAM3
Q9BX93Group XIIB secretory phospholipase A2-likePLA2G12B
protein
Q9BXI9Complement C1q tumor necrosis factor-C1QTNF6
related protein 6
Q9BXJ0Complement C1q tumor necrosis factor-C1QTNF5
related protein 5
Q9BXJ1Complement C1q tumor necrosis factor-C1QTNF1
related protein 1
Q9BXJ2Complement C1q tumor necrosis factor-C1QTNF7
related protein 7
Q9BXJ3Complement C1q tumor necrosis factor-C1QTNF4
related protein 4
Q9BXJ4Complement C1q tumor necrosis factor-C1QTNF3
related protein 3
Q9BXJ5Complement C1q tumor necrosis factor-C1QTNF2
related protein 2
Q9BXN1AsporinASPN
Q9BXP8Pappalysin-2PAPPA2
Q9BXR6Complement factor H-related protein 5CFHR5
Q9BXS0Collagen alpha-1(XXV) chainCOL25A1
Q9BXX0EMILIN-2EMILIN2
Q9BXY4R-spondin-3RSPO3
Q9BY15EGF-like module-containing mucin-likeEMR3
hormone receptor-like 3 subunit beta
Q9BY50Signal peptidase complex catalytic subunitSEC11C
SEC11C
Q9BY76Angiopoietin-related protein 4ANGPTL4
Q9BYF1Processed angiotensin-converting enzyme 2ACE2
Q9BYJ0Fibroblast growth factor-binding protein 2FGFBP2
Q9BYW3Beta-defensin 126DEFB126
Q9BYX4Interferon-induced helicase C domain-IFIH1
containing protein 1
Q9BYZ8Regenerating islet-derived protein 4REG4
Q9BZ76Contactin-associated protein-like 3CNTNAP3
Q9BZG9Ly-6/neurotoxin-like protein 1LYNX1
Q9BZJ3Tryptase deltaTPSD1
Q9BZM1Group XIIA secretory phospholipase A2PLA2G12A
Q9BZM2Group IIF secretory phospholipase A2PLA2G2F
Q9BZM5NKG2D ligand 2ULBP2
Q9BZP6Acidic mammalian chitinaseCHIA
Q9BZZ2SialoadhesinSIGLEC1
Q9C0B6Protein FAM5BFAM5B
Q9GZM7Tubulointerstitial nephritis antigen-likeTINAGL1
Q9GZN4Brain-specific serine protease 4PRSS22
Q9GZP0Platelet-derived growth factor D, receptor-PDGFD
binding form
Q9GZT5Protein Wnt-10aWNT10A
Q9GZU5NyctalopinNYX
Q9GZV7Hyaluronan and proteoglycan link protein 2HAPLN2
Q9GZV9Fibroblast growth factor 23FGF23
Q9GZX9Twisted gastrulation protein homolog 1TWSG1
Q9GZZ7GDNF family receptor alpha-4GFRA4
Q9GZZ8Extracellular glycoprotein lacritinLACRT
Q9H0B8Cysteine-rich secretory protein LCCL CRISPLD2
domain-containing 2
Q9H106Signal-regulatory protein deltaSIRPD
Q9H114Cystatin-like 1CSTL1
Q9H173Nucleotide exchange factor SIL1SIL1
Q9H1E1Ribonuclease 7RNASE7
Q9H1F0WAP four-disulfide core domain protein 10AWFDC10A
Q9H1J5Protein Wnt-8aWNT8A
Q9H1J7Protein Wnt-5bWNT5B
Q9H1M3Beta-defensin 129DEFB129
Q9H1M4Beta-defensin 127DEFB127
Q9H1Z8AugurinC2orf40
Q9H239Matrix metalloproteinase-28MMP28
Q9H2A7C-X-C motif chemokine 16CXCL16
Q9H2A9Carbohydrate sulfotransferase 8CHST8
Q9H2R5Kallikrein-15KLK15
Q9H2X0ChordinCHRD
Q9H2X3C-type lectin domain family 4 member MCLEC4M
Q9H306Matrix metalloproteinase-27MMP27
Q9H324A disintegrin and metalloproteinase withADAMTS10
thrombospondin motifs 10
Q9H336Cysteine-rich secretory protein LCCL CRISPLD1
domain-containing 1
Q9H3E2Sorting nexin-25SNX25
Q9H3R2Mucin-13MUC13
Q9H3U7SPARC-related modular calcium-bindingSMOC2
protein 2
Q9H3Y0Peptidase inhibitor R3HDMLR3HDML
Q9H4A4Aminopeptidase BRNPEP
Q9H4F8SPARC-related modular calcium-bindingSMOC1
protein 1
Q9H4G1Cystatin-9-likeCST9L
Q9H5V8CUB domain-containing protein 1CDCP1
Q9H6B9Epoxide hydrolase 3EPHX3
Q9H6E4Coiled-coil domain-containing protein 134 CCDC134
Q9H741UPF0454 protein C12orf49C12orf49
Q9H772Gremlin-2GREM2
Q9H7Y0Deleted in autism-related protein 1CXorf36
Q9H8L6Multimerin-2MMRN2
Q9H9S5Fukutin-related proteinFKRP
Q9HAT2Sialate O-acetylesteraseSIAE
Q9HB40Retinoid-inducible serine carboxypeptidaseSCPEP1
Q9HB63Netrin-4NTN4
Q9HBJ0Placenta-specific protein 1PLAC1
Q9HC23Prokineticin-2PROK2
Q9HC57WAP four-disulfide core domain protein 1WFDC1
Q9HC73Cytokine receptor-like factor 2CRLF2
Q9HC84Mucin-5BMUC5B
Q9HCB6Spondin-1SPON1
Q9HCQ7Neuropeptide NPSFNPVF
Q9HCT0Fibroblast growth factor 22FGF22
Q9HD89ResistinRETN
Q9NNX1TuftelinTUFT1
Q9NNX6CD209 antigenCD209
Q9NP55BPI fold-containing family A member 1BPIFA1
Q9NP70AmeloblastinAMBN
Q9NP95Fibroblast growth factor 20FGF20
Q9NP99Triggering receptor expressed on myeloidTREM1
cells 1
Q9NPA2Matrix metalloproteinase-25MMP25
Q9NPE2NeugrinNGRN
Q9NPH0Lysophosphatidic acid phosphatase type 6ACP6
Q9NPH6Odorant-binding protein 2bOBP2B
Q9NQ30Endothelial cell-specific molecule 1ESM1
Q9NQ36Signal peptide, CUB and EGF-like domain-SCUBE2
containing protein 2
Q9NQ38Serine protease inhibitor Kazal-type 5SPINK5
Q9NQ76Matrix extracellular phosphoglycoproteinMEPE
Q9NQ79Cartilage acidic protein 1CRTAC1
Q9NR16Scavenger receptor cysteine-rich type 1CD163L1
protein M160
Q9NR23Growth/differentiation factor 3GDF3
Q9NR71Neutral ceramidaseASAH2
Q9NR99Matrix-remodeling-associated protein 5MXRA5
Q9NRA1Platelet-derived growth factor CPDGFC
Q9NRC9OtoraplinOTOR
Q9NRE1Matrix metalloproteinase-26MMP26
Q9NRJ3C-C motif chemokine 28CCL28
Q9NRM1EnamelinENAM
Q9NRN5Olfactomedin-like protein 3OLFML3
Q9NRR1Cytokine-like protein 1CYTL1
Q9NS15Latent-transforming growth factor beta-LTBP3
binding protein 3
Q9NS62Thrombospondin type-1 domain-containingTHSD1
protein 1
Q9NS71Gastrokine-1GKN1
Q9NS98Semaphorin-3GSEMA3G
Q9NSA1Fibroblast growth factor 21FGF21
Q9NT22EMILIN-3EMILIN3
Q9NTU7Cerebellin-4CBLN4
Q9NVR0Kelch-like protein 11KLHL11
Q9NWH7Spermatogenesis-associated protein 6SPATA6
Q9NXC2Glucose-fructose oxidoreductase domain-GFOD1
containing protein 1
Q9NY56Odorant-binding protein 2aOBP2A
Q9NY84Vascular non-inflammatory molecule 3VNN3
Q9NZ20Group 3 secretory phospholipase A2PLA2G3
Q9NZC2Triggering receptor expressed on myeloidTREM2
cells 2
Q9NZK5Adenosine deaminase CECR1CECR1
Q9NZK7Group IIE secretory phospholipase A2PLA2G2E
Q9NZP8Complement Cir subcomponent-like proteinC1RL
Q9NZV1Cysteine-rich motor neuron 1 proteinCRIM1
Q9NZW4Dentin sialoproteinDSPP
Q9P0G3Kallikrein-14KLK14
Q9P0W0Interferon kappaIFNK
Q9P218Collagen alpha-1(XX) chainCOL20A1
Q9P2C4Transmembrane protein 181TMEM181
Q9P2K2Thioredoxin domain-containing protein 16TXNDC16
Q9P2N4A disintegrin and metalloproteinase withADAMTS9
thrombospondin motifs 9
Q9UBC7Galanin-like peptideGALP
Q9UBD3Cytokine SCM-1 betaXCL2
Q9UBD9Cardiotrophin-like cytokine factor 1CLCF1
Q9UBM4OpticinOPTC
Q9UBP4Dickkopf-related protein 3DKK3
Q9UBQ6Exostosin-like 2EXTL2
Q9UBR5Chemokine-like factorCKLF
Q9UBS5Gamma-aminobutyric acid type B receptorGABBR1
subunit 1
Q9UBT3Dickkopf-related protein 4 short formDKK4
Q9UBU2Dickkopf-related protein 2DKK2
Q9UBU3Ghrelin-28GHRL
Q9UBV4Protein Wnt-16WNT16
Q9UBX5Fibulin-5FBLN5
Q9UBX7Kallikrein-11KLK11
Q9UEF7KlothoKL
Q9UFP1Protein FAM198AFAM198A
Q9UGM3Deleted in malignant brain tumors 1 proteinDMBT1
Q9UGM5Fetuin-BFETUB
Q9UGP8Translocation protein SEC63 homologSEC63
Q9UHF0Neurokinin-BTAC3
Q9UHF1Epidermal growth factor-like protein 7EGFL7
Q9UHG2ProSAASPCSK1N
Q9UHI8A disintegrin and metalloproteinase withADAMTS1
thrombospondin motifs 1
Q9UHL4Dipeptidyl peptidase 2DPP7
Q9UI42Carboxypeptidase A4CPA4
Q9UIG4Psoriasis susceptibility 1 candidate gene 2PSORS1C2
protein
Q9UIK5Tomoregulin-2TMEFF2
Q9UIQ6Leucyl-cystinyl aminopeptidase, pregnancy LNPEP
serum form
Q9UJA9EctonucleotideENPP5
pyrophosphatase/phosphodiesterase family
member 5
Q9UJH8MeteorinMETRN
Q9UJJ9N-acetylglucosamine-1-phosphotransferaseGNPTG
subunit gamma
Q9UJW2Tubulointerstitial nephritis antigenTINAG
Q9UK05Growth/differentiation factor 2GDF2
Q9UK55Protein Z-dependent protease inhibitorSERPINA10
Q9UK85Dickkopf-like protein 1DKKL1
Q9UKJ1Paired immunoglobulin-like type 2 receptorPILRA
alpha
Q9UKP4A disintegrin and metalloproteinase withADAMTS7
thrombospondin motifs 7
Q9UKP5A disintegrin and metalloproteinase withADAMTS6
thrombospondin motifs 6
Q9UKQ2Disintegrin and metalloproteinase domain-ADAM28
containing protein 28
Q9UKQ9Kallikrein-9KLK9
Q9UKR0Kallikrein-12KLK12
Q9UKR3Kallikrein-13KLK13
Q9UKU9Angiopoietin-related protein 2ANGPTL2
Q9UKZ9Procollagen C-endopeptidase enhancer 2PCOLCE2
Q9UL52Transmembrane protease serine 11E non-TMPRSS11E
catalytic chain
Q9ULC0EndomucinEMCN
Q9ULI3Protein HEG homolog 1HEG1
Q9ULZ1Apelin-13APLN
Q9ULZ9Matrix metalloproteinase-17MMP17
Q9UM21Alpha-13-mannosyl-glycoprotein 4-beta-N-MGAT4A
acetylglucosaminyltransferase A soluble form
Q9UM22Mammalian ependymin-related protein 1EPDR1
Q9UM73ALK tyrosine kinase receptorALK
Q9UMD997 kDa linear IgA disease antigenCOL17A1
Q9UMX5NeudesinNENF
Q9UN73Protocadherin alpha-6PCDHA6
Q9UNA0A disintegrin and metalloproteinase withADAMTS5
thrombospondin motifs 5
Q9UNI1Chymotrypsin-like elastase family member 1CELA1
Q9UNK4Group IID secretory phospholipase A2PLA2G2D
Q9UP79A disintegrin and metalloproteinase withADAMTS8
thrombospondin motifs 8
Q9UPZ6Thrombospondin type-1 domain-containingTHSD7A
protein 7A
Q9UQ72Pregnancy-specific beta-1-glycoprotein 11 PSG11
Q9UQ74Pregnancy-specific beta-1-glycoprotein 8PSG8
Q9UQC9Calcium-activated chloride channel regulatorCLCA2
2
Q9UQE7Structural maintenance of chromosomesSMC3
protein 3
Q9UQP3Tenascin-NTNN
Q9Y223UDP-N-acetylglucosamine 2-epimeraseGNE
Q9Y240C-type lectin domain family 11 member ACLEC11A
Q9Y251Heparanase 8 kDa subunitHPSE
Q9Y258C-C motif chemokine 26CCL26
Q9Y264Angiopoietin-4ANGPT4
Q9Y275Tumor necrosis factor ligand superfamilyTNFSF13B
member 13b, membrane form
Q9Y287BRI2 intracellular domainITM2B
Q9Y2E5Epididymis-specific alpha-mannosidaseMAN2B2
Q9Y334von Willebrand factor A domain-containing VWA7
protein 7
Q9Y337Kallikrein-5KLK5
Q9Y3B3Transmembrane emp24 domain-containingTMED7
protein 7
Q9Y3E2BolA-like protein 1BOLA1
Q9Y426C2 domain-containing protein 2C2CD2
Q9Y4K0Lysyl oxidase homolog 2LOXL2
Q9Y4X3C-C motif chemokine 27CCL27
Q9Y5C1Angiopoietin-related protein 3ANGPTL3
Q9Y5I2Protocadherin alpha-10PCDHA10
Q9Y5I3Protocadherin alpha-1PCDHA1
Q9Y5K2Kallikrein-4KLK4
Q9Y5L2Hypoxia-inducible lipid droplet-associatedHILPDA
protein
Q9Y5Q5Atrial natriuretic peptide-converting enzymeCORIN
Q9Y5R2Matrix metalloproteinase-24MMP24
Q9Y5U5Tumor necrosis factor receptor superfamilyTNFRSF18
member 18
Q9Y5W5Wnt inhibitory factor 1WIF1
Q9Y5X9Endothelial lipaseLIPG
Q9Y625Secreted glypican-6GPC6
Q9Y646Carboxypeptidase QCPQ
Q9Y6C2EMILIN-1EMILIN1
Q9Y6F9Protein Wnt-6WNT6
Q9Y6I9Testis-expressed sequence 264 proteinTEX264
Q9Y6L7Tolloid-like protein 2TLL2
Q9Y6N3Calcium-activated chloride channel regulatorCLCA3P
family member 3
Q9Y6N6Laminin subunit gamma-3LAMC3
Q9Y6R7IgGFc-binding proteinFCGBP
Q9Y6Y9Lymphocyte antigen 96LY96
Q9Y6Z7Collectin-10COLEC10

[0275]

In some embodiments, the compositions and methods of the invention provide for the delivery of one or more mRNAs encoding one or more additional exemplary proteins listed in Table 3; thus, compositions of the invention may comprise an mRNA encoding a protein listed in Table 3 (or a homolog thereof) along with other components set out herein, and methods of the invention may comprise preparing and/or administering a composition comprising an mRNA encoding a protein chosen from the proteins listed in Table 3 (or a homolog thereof) along with other components set out herein.

[0000]

Additional Exemplary Proteins
Uniprot IDProtein NameGene Name
A6NGW2Putative stereocilin-like proteinSTRCP1
A6NIE9Putative serine protease 29PRSS29P
A6NJ16Putative V-set and immunoglobulin IGHV4OR15-8
domain-containing-like
protein IGHV4OR15-8
A6NJS3Putative V-set and immunoglobulin IGHV1OR21-1
domain-containing-like
protein IGHV1OR21-1
A6NMY6Putative annexin A2-like proteinANXA2P2
A8MT79Putative zinc-alpha-2-glycoprotein-like 1
A8MWS1Putative killer cell immunoglobulin-likeKIR3DP1
receptor like protein KIR3DP1
A8MXU0Putative beta-defensin 108ADEFB108P1
C9JUS6Putative adrenomedullin-5-like proteinADM5
P0C7V7Putative signal peptidase complex catalyticSEC11B
subunit SEC11B
P0C854Putative cat eye syndrome critical regionCECR9
protein 9
Q13046Putative pregnancy-specific beta-1-PSG7
glycoprotein 7
Q16609Putative apolipoprotein(a)-like protein 2LPAL2
Q2TV78Putative macrophage-stimulating proteinMST1P9
MSTP9
Q5JQD4Putative peptide YY-3PYY3
Q5R387Putative inactive group IIC secretoryPLA2G2C
phospholipase A2
Q5VSP4Putative lipocalin 1-like protein 1LCN1P1
Q5W188Putative cystatin-9-like protein CST9LP1CST9LP1
Q6UXR4Putative serpin A13SERPINA13P
Q86SH4Putative testis-specific prion proteinPRNT
Q86YQ2Putative latherinLATH
Q8IVG9Putative humanin peptideMT-RNR2
Q8NHM4Putative trypsin-6TRY6
Q8NHW4C-C motif chemokine 4-likeCCL4L2
Q9H7L2Putative killer cell immunoglobulin-likeKIR3DX1
receptor-like protein KIR3DX1
Q9NRI6Putative peptide YY-2PYY2
Q9UF72Putative TP73 antisense gene protein 1TP73-AS1
Q9UKY3Putative inactive carboxylesterase 4CES1P1

[0276]

The Uniprot IDs set forth in Table 2 and Table 3 refer to the human versions the listed proteins and the sequences of each are available from the Uniprot database. Sequences of the listed proteins are also generally available for various animals, including various mammals and animals of veterinary or industrial interest. Accordingly, in some embodiments, compositions and methods of the invention provide for the delivery of one or more mRNAs encoding one or more proteins chosen from mammalian homologs or homologs from an animal of veterinary or industrial interest of the secreted proteins listed in Table 2 and Table 3; thus, compositions of the invention may comprise an mRNA encoding a protein chosen from mammalian homologs or homologs from an animal of veterinary or industrial interest of a protein listed in Table 2 and Table 3 along with other components set out herein, and methods of the invention may comprise preparing and/or administering a composition comprising an mRNA encoding a protein chosen from mammalian homologs or homologs from an animal of veterinary or industrial interest of a protein listed in Table 2 and Table 3 along with other components set out herein. In some embodiments, mammalian homologs are chosen from mouse, rat, hamster, gerbil, horse, pig, cow, llama, alpaca, mink, dog, cat, ferret, sheep, goat, or camel homologs. In some embodiments, the animal of veterinary or industrial interest is chosen from the mammals listed above and/or chicken, duck, turkey, salmon, catfish, or tilapia.

[0277]

In embodiments, the compositions and methods of the invention provide for the delivery of mRNA encoding a lysosomal protein chosen from Table 4. In some embodiments, the compositions and methods of the invention provide for the delivery of one or more mRNAs encoding one or more lysosomal and/or related proteins listed in Table 4; thus, compositions of the invention may comprise an mRNA encoding a protein listed in Table 4 (or a homolog thereof) along with other components set out herein, and methods of the invention may comprise preparing and/or administering a composition comprising an mRNA encoding a protein chosen from the proteins listed in Table 4 (or a homolog thereof) along with other components set out herein.

[0000]

α-fucosidase
α-galactosidase
α-glucosidase
α-Iduronidase
α-mannosidase
α-N-acetylgalactosaminidase (α-galactosidase B)
β-galactosidase
β-glucuronidase
β-hexosaminidase
β-mannosidase
3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) lyase
3-methylcrotonyl-CoA carboxylase
3-O-sulfogalactosyl cerebroside sulfatase (arylsulfatase A)
acetyl-CoA transferase
acid alpha-glucosidase
acid ceramidase
acid lipase
acid phosphatase
acid sphingomyelinase
alpha-galactosidase A
arylsulfatase A
beta-galactosidase
beta-glucocerebrosidase
beta-hexosaminidase
Biotinidase
cathepsin A
cathepsin K
CLN3
CLN5
CLN6
CLN8
CLN9
cystine transporter (cystinosin)
cytosolic protein beta3A subunit of the adaptor
protein-3 complex, AP3
formyl-Glycine generating enzyme (FGE)
Galactocerebrosidase
galactose-1-phosphate uridyltransferase (GALT)
galactose 6-sulfate sulfatase (also known as
N-acetylgalactosamine-6-sulfatase)
Glucocerebrosidase
glucuronate sulfatase
glucuronidase
glycoprotein cleaving enzymes
glycosaminoglycan cleaving enzymes
glycosylasparaginase (aspartylglucosaminidase)
GM2-AP
Heparan-alpha-glucosaminide N-acetyltransferase
(HGSNAT, TMEM76)
Heparan sulfatase
hexosaminidase A lysosomal proteases
methylmalonyl-CoA mutase
Hyaluronidase
Iduronate sulfatase
LAMP-2
lysosomal α-mannosidase
Lysosomal p40 (C2orf18)
Major facilitator superfamily domain
containing 8 protein (MFSD8 or CLN7)
N-acetylgalactosamine 4-sulfatase
N-acetyl glucosamine 6-sulfatase
N-acetyl glucosaminidase
N-acetylglucosamine-1-phosphate transferase
NPC1
NPC2
palmitoyl-protein thioesterase
palmitoyl-protein thioesterase (CLN1)
Saposin A (Sphingolipid activator protein A)
Saposin B (Sphingolipid activator protein B)
Saposin C (Sphingolipid activator protein C)
Saposin D (Sphingolipid activator protein D)
sialic acid transporter (sialin)
Sialidase
Sialin
Sulfatase
Transmembrane protein 74 (TMEM74)
tripeptidyl-peptidase
tripeptidyl-peptidase I (CLN2)
UDP-N-acetylglucosamine- phosphotransferase

[0278]

Information regarding lysosomal proteins is available from Lubke et al., “Proteomics of the Lysosome,” Biochim Biophys Acta. (2009) 1793: 625-635. In some embodiments, the protein listed in Table 3 and encoded by mRNA in the compositions and methods of the invention is a human protein. Sequences of the listed proteins are also available for various animals, including various mammals and animals of veterinary or industrial interest as described above.

[0279]

In some embodiments, the compositions and methods of the invention provide for the delivery of mRNA encoding a therapeutic protein (e.g., cytosolic, transmembrane or secreted) such as those listed in Table 5. In some embodiments, the compositions and methods of the invention provide for the delivery of an mRNA encoding a therapeutic protein useful in treating a disease or disorder (i.e., indication) listed in Table 5; thus, compositions of the invention may comprise an mRNA encoding a therapeutic protein listed or not listed in Table 5 (or a homolog thereof, as discussed below) along with other components set out herein for treating a disease or disorder (i.e., indication) listed in Table 5, and methods of the invention may comprise preparing and/or administering a composition comprising an mRNA encoding a such a protein (or a homolog thereof, as discussed below) along with other components set out herein for treatment of a disease or disorder listed in Table 5.

[0000]

Exemplary Indications and Related Proteins
IndicationTherapeutic Protein
3-Methylcrotonyl-CoA Methylcrotonoyl-CoA
carboxylase deficiencycarboxylase
3-Methylglutaconic aciduriaMethylglutaconyl-CoA
hydratase
Actinic keratosis
Acute intermittent porphyriaPorphobilinogen deaminase
Acute lymphocytic leukemia
Acute myeloid leukemia
Addison's disease
Adenosine deaminase deficiencyAdenosine deaminase
AdrenoleukodystrophyABCD1
Adrenomyeloneuropathy
AIDS/HIV
Alcohol use disorders
AlkaptonuriaHomogentisate 1,2-dioxygenase
Allergic asthmaAnti-IgE mAb
Allergies (dermatitis, rhinitis)
Alopecia areata
Alpers' diseasePOLG
Alpers-Huttenlocher syndrome
Alpha 1-antitrypsin deficiencyAlpha 1 protease inhibitor
Alpha-mannosidosisAlpha-D-mannosidase
Alport syndrome
Alzheimer's disease
Amyloid light-chain amyloidosis
Amyotrophic lateral sclerosis (ALS)
AnemiaErythropoietin
Aortic valve stenosis
ArgininemiaArginase
Argininosuccinic acidemiaArgininosuccinate lyase
Arrhythmogenic right
ventricular dysplasia
Autism
Autosomal dominant and
recessive progressive
external ophthalmoplegia
with mitochondrial
DNA deletions
Autosomal recessive ARPKD
polycystic kidney disease
Bacterial infections
Basal cell carcinoma
Batten diseaseBattenin + others
B-cell chronic lymphocytic leukemia
Becker muscular dystrophyDystrophin
Beta-thalassemiaBeta globin
Binge eating disorder
Bipolar disorder
Bladder cancer
Blepharospasm, Cervical Botulinum toxin
dystonia, Chronic
migraine, more
Bronchiolitis obliterans
Brugada syndrome
Buerger's disease
CACNA1A
CACNB4-related Episodic
Ataxia Type 2
Cancer and depression
Cancer and sexual dysfunction
Cancer in pregnancy
Carbamylphosphate Carbamylphosphate
synthetase deficiencysynthetase
Carcinoma of the gallbladder
Cardiomyopathy (diabetic)
Cardiomyopathy (hypertrophic)
Carnitine uptake defectSLC22A5
Catecholaminergic
polymorphic ventricular
tachycardia
CDKL5-related Atypical
Rett Syndrome
Celiac disease
Cellulitis
Cerebrovascular disease
Cervix uteri cancer
Chronic fatigue syndrome
Chronic graft versus host disease
Chronic idiopathic urticaria
Chronic immune thrombocytopeniaThrombopoietin
Chronic kidney kisease
Chronic liver disease
Chronic lymphocytic leukemia
Chronic myeloid leukemia
Chronic pancreatitis
Cirrhosis of the liver
Citrullinemia, type IArgininosuccinate synthase
Classic Rett Syndrome
Classical galactosemiaGalactose-1-phosphate
uridylyltransferase
Clostridium difficile
associated diarrhea
Clotting disorders
COAD/COPD
Cocaine addiction
COL4A5-related disorders
Cold contact urticaria
Contraception, female
Coronary artery diseases
Corpus uteri cancer
Corticobasal degeneration
Crigler-Najjar syndromeUDP-glucuronosyltransferase
Critical limb ischemia
CTNS-related cystinosis
Cutaneous lupus erythematosus
Cutaneous neuroendocrine
carcinoma (Merkel Cell)
Cystic fibrosisCFTR
Cystic fibrosisDeoxyribonuclease I
CystinosisCystinosin
CystinuriaSLC7A9
Dementia (Lewy body)
Depression
Diabetic foot infections
Diabetic foot ulcer
Diabetic peripheral neuropathy
Diabetic ulcers
Diarrhoeal diseases
Diffuse large B-cell lymphoma
DiGeorge syndrome
Diverticulitis
Drug use disorders
Duchenne muscular dystrophyDystrophin
Dysarthria
Dyskinesia (levodopa-induced)
Early-onset autosomal dominant
Alzheimer's disease
Eczema
Ehlers-Danlos syndrome, type 1
EIF2B1
EIF2B2
EIF2B3
EIF2B4
EIF2B5-related childhood
ataxia with central
nervous system
hypomyelination/vanishing
white matter
Eosinophilic esophagitis
Epilepsy
Erectile dysfunction
Erythropoietic protoporphyriaFerrochelatase
Esophageal carcinoma
Essential tremor
Fabry diseaseAlpha galactosidase
Familial adenomatous polyposisAPC
Familial chylomicronemiaLipoprotein lipase
Familial dysbetalipoproteinemiaApolipoprotein E
Familial isolated dilated
cardiomyopathy
Familial mediterranean feverPyrin (MEFV)
Familial melanoma
Female infertilityFollicle stimulating hormone
Female sexual dysfunction
Fibromyalgia
FMR1-related disorders
Fracture healing
Fragile X Premature
Ovarian Failure Syndrome
Fragile X syndromeFMRP
Fragile X-Associated
Tremor/Ataxia Syndrome
Friedreich's ataxia
Frontotemporal dementia
Fryns syndrome
Galactocerebrosidase deficiencies
GALE deficiencyGalactose epimerase
GALK deficiencyGalactokinase
GALT-related galactosemia
Gastric cancer
Gastroesophageal reflux disease
Gaucher diseaseGlucocerebrosidase
Gilbert syndromeUDP-glucuronosyltransferase
Glioblastoma multiforme
Glomerulonephritis
Glutaric acidemia, type IGlutaryl-CoA dehydrogenase
GM2 gangliosidosisHEXA, HEXB
GoutUrate oxidase
Graft versus host disease
Growth hormone deficiencyGrowth hormone 1/
Growth hormone 2
Head and neck cancer, Metastatic Anti-EGFr mAb
colorectal cancer
Hearing loss, adult onset
Heart failure
HemachromatosisHFE protein
Hemifacial spasm
Hemolytic uremic syndromeAnti-complement
factor C5 mAb
Hemophilia AFactor VIII
Hemophilia A, Hemophilia BFactor VII
Hemophilia BFactor IX
Hepatitis B, Hepatitis CInterferon alpha
HER2+ breast cancer, gastric cancerAnti-HER2 mAb
Hereditary angioedemaC1 esterase inhibitor
Hereditary hemorrhagic
telangiectasia
Hereditary hemorrhagic
telangiectasia (AT)
Hereditary spherocytosis
Hidradenitis suppurativa
HomocystinuriaCystathionine beta-synthase
Homozygous familial LDL receptor
hypercholesterolemia
Hunter syndrome (MPS II)Iduronate-2-sulfatase
Huntington diseaseHuntingtin
Hurler syndrome (MPS I)Alpha-L iduronidase
Hydrolethalus
Hyperalgesia
Hyperbilirubinemia
Hyperhidrosis
Hyperlipidemia
HypermethioninemiaMethionine adenosyltransferase
Hyperoxaluria, type ISerine-pyruvate
aminotransferase
Hypertension
Hyperuricemia
Hyponatremia
HypoparathyroidismParathyroid hormone
HypophosphatasiaTNSALP
Idiopathic pulmonary fibrosis
Iminoglycinuria
Immunoglobulin deficiencyImmunoglobulin
Infection (adenovirus)
Infection (anthrax prophylaxis)
Infection (BK virus)
Infection (Clostridium difficile
prophylaxis)
Infection (Dengue
fever prophylaxis)
Infection (Epstein-Barr virus)
Infection (Hepatitis-D)
Infection (Lyme disease
prophylaxis)
Infection (Smallpox virus)
Infectious diseases vaccinesInfectious antigen
Inflammatory heart diseases
Insomnia
Interstitial cystitis
Iron-deficiency anaemia
Irritable bowel disease
Ischaemic heart disease
Isovaleric aciduriaIsovaleric acid CoA
dehydrogenase deficiency
Jansky-Bielschowsky disease
Juvenile Batten disease
Juvenile Neuronal Ceroid
Lipofuscinosis (JNCL)
Juvenile rheumatoid arthritisTNF-alpha inhibitors
Kennedy's disease (SBMA)
Keratoconus
Krabbe diseaseGalactocerebrosidase
Leber's hereditary optic neuropathyNADH dehydrogenase
Leiomyosarcoma
Lennox-Gastaut syndrome
Lesch-Nyhan syndromeHypoxanthine
phosphoribosyltransferase 1
Leukaemia
Li-Fraumeni syndromeTP53
Lipoma
Liposarcoma
Liver cancer
Long-chain 3-OH acyl-CoA Long-chain-3-hydroxyacyl-
dehydrogenase deficiencyCoA dehydrogenase
Lower respiratory infections
Lysosomal acid lipase deficiencyLysosomal acid lipase
Macular degeneration
Major depressive disorder
Malignant fibrous histiocytoma
Mantle cell lymphoma
Maple syrup urine disease3-methyl-2-oxobutanoate
dehydrogenase
Marfan syndromeFBN1
Maroteaux-Lamy N-acetylgalactosamine
syndrome (MPS VI)4-sulfatase
Mastocytosis
McArdle diseaseMuscle glycogen
phosphorylase
MECP2-related disorders
MECP2-related Severe
Neonatal Encephalopathy
Medium-chain acyl-CoA Acyl-CoA dehydrogenase
dehydrogenase deficiency
MelanomaAnti-CTLA4 mAb
Metachromatic leukodystrophyArylsulfatase A
Metastatic colorectal cancer, Anti-VEGF mAb
NSCLC, others
Methylmalonyl-CoA Methylmalonyl-CoA mutase
mutase deficiency
Migraine
Mitochondrial oxidative
phosphorylation disorders
Morquio syndrome, Galactose 6-sulfate
type A (MPS IVA)sulfatase
Morquio syndrome, Beta-galactosidase
type B (MPS IVB)
Mouth and oropharynx cancers
Multiple carboxylase deficiencyBiotin-methylcrotonoyl-
CoA-carboxylase ligase
Multiple myeloma
Multiple sclerosisAnti-VLA-4 mAb
Multiple sclerosisInterferon beta
Multiple system atrophy
Myasthenia gravis
Myelofibrosis
Narcolepsy
Neonatal bronchopulmonary
dysplasia
Neonatal infections
Nephritis and nephrosis
Neurofibromatosis, type 1NF-1
Neuronal ceroid lipofuscinoses-
related diseases
NeutropeniaG-CSF
Niemann Pick disease, type A/BSMPD1
Niemann Pick disease, type CNPC1
Niemann-Pick disease Type C1
Nocturia
Non-alcoholic fatty liver disease
Non-Hodgkin lymphomaAnti-CD20 mAb
Non-small cell lung cancer
Notch-3 related cerebral
autosomal dominant
arteriopathy with
subcortical infarcts and
leukoencephalopathy
(CADASIL)
Obesity
Ophthalmoparesis
Opioid induced constipation
Ornithine transcarbamylase deficiencyOrnithine transcarbamylase
Osteoarthritis
Osteopetrosis
OsteoporosisAnti-RANKL mAb
Ovarian cancer
Paget disease of boneSequestosome 1
Pain
Pancreatic carcinoma
Panic disorder
Parkinson disease
Paroxysmal nocturnal Anti-complement
hemoglobinuriafactor C5 Mab
Pediculosis capitis (head lice)
Pelizaeus-Merzbacher disease
Pemphigus vulgaris
Peptic ulcer disease
Peripheral neuropathy
Peyronie's disease
PhenylketonuriaPhenylalanine hydroxylase
Pneumococcal infection
prophylaxis
POLG-related sensory
ataxic neuropathy
Polycystic kidney disease
Polycystic ovary syndrome
Polycythaemia vera
Polymerase G-related disorders
Polymorphous light eruption
Pompe diseaseAlpha glucosidase
Porphyria cutanea tardaUroporphyrinogen
decarboxylase
Post herpetic neuralgia
Post-organ transplant
Pouchitis
PPM-X Syndrome
Prader-Willi syndrome
Preeclampsia
Premature ejaculation
Prematurity and low birth weight
Primary ciliary dyskinesia
Primary glomerular diseases
Primary humoral immuneImmunoglobulin
deficiencies (e.g., CVID)
Proctitis
Progressive multifocal
leukoencephalopathy
Progressive supranuclear palsy
Propionic acidemiaPropionyl-CoA carboxylase
Prostate cancer
PsoriasisAnti-IL-12 & IL-23 mAb
Psoriatic arthritisTNF-alpha inhibitors
PTT-1
Pulmonary arterial hypertension
Pulmonary arterial hypertension
Raynaud's phenomenon
Refractive errors
Renal cell carcinoma
Restless leg syndrome
Retinitis pigmentosa
Rheumatic heart disease
Rheumatoid arthritisAnti-interleukin-6
(IL-6) mAb
Rheumatoid arthritisT-cell costimulation blocker
Rheumatoid arthritisTNF-alpha inhibitor
Romano-Ward syndrome
Rosacea
Sanfilippo syndrome, Heparan N-sulfatase
type A (MPS IIIA)
Sanfilippo syndrome, N-acetyl-alpha-D-
type B (MPS IIIB)glucosaminidase
Santavuori-Haltia disease
Schizophrenia
Schnitzler syndrome
Scleroderma
SCN1A
SCN1B-related seizure disorders
Short-chain acyl-CoA Butyryl-CoA
dehydrogenase deficiencydehydrogenase
Sickle cell diseaseHemoglobin
SLC3A1-related disorders
Small cell lung cancer
SMN-1-related spinal
muscular atrophy (SMA)
Spinal muscular atrophySurvival motor neuron protein
Squamous cell carcinoma
of head and neck
Stickler syndrome
Stomach cancer
Stroke prophylaxis
Synovial sarcoma
Systemic lupus erythematosusAnti-BAFF
Systemic sclerosis
Tetrahydrobiopterin-deficientTetrahydrobiopterin
hyperphenylalaninemia
Thromboangiitis obliterans
Thrombotic disorders
Thyroid cancer
TPP1 deficiencies
Trachea, bronchus, lung cancers
Tricuspid atresia
TSC1
TSC2-related tuberous sclerosis
Type 2 diabetes mellitusGlucagon-like peptide 1
(GLP-1) agonist
Type 2 diabetes mellitusInsulin
Tyrosinemia, type IFumarylacetoacetase
Ulcerative colitis
Uterine fibroids
Varicose veins
Venous thromboembolism
Very long-chain acyl-CoA Long-chain-acyl-CoA
dehydrogenase deficiencydehydrogenase
von Gierke's diseaseGlucose-6-phosphatase
Von Hippel-Lindau diseasepVHL
Wegener granulomatosis
Wilson diseaseWilson disease protein
X-Linked adrenal hypoplasia
X-linked adrenoleukodystrophy
X-linked agammaglobulinemiaBruton's tyrosine kinase

[0280]

In some embodiments, the present invention is used to prevent, treat and/or cure a subject affected with a disease or disorder listed or associated with the proteins listed in Tables 2, 3, 4, or 5. In some embodiments, an mRNA encodes one or more of Cystic Fibrosis Transmembrane Conductance Regulator (CFTR), argininosuccinate synthetase (ASS1), Factor IX, survival motor neuron 1 (SMN1), or phenylalanine hydroxylase (PAH).

[0281]

While certain compounds, compositions and methods of the present invention have been described with specificity in accordance with certain embodiments, the following examples serve only to illustrate the compounds of the invention and are not intended to limit the same.

EXAMPLES

[0282]

The following generic schemes and examples illustrate how to prepare the DALs of the present invention.

Example 1. Synthesis of (15)

[0283]

Synthesis of (3).

[0284]

To a mixture of (1) (50 g, 0.54 mol) and (2) (225 g, 1.7 mol), was added NaOH (40% aqueous solution, 68 mL) by a dropping funnel over 30 min. The reaction mixture was heated to reflux overnight, cooled to room temperature. The reaction mixture was diluted with ether (200 mL), washed with brine (200 mL) and dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo, and the crude product was purified by distillation (pressure: 0.1 torr vacuum, temp: 90° C.), collected (3) as a clear oil (67.2 g, 38%).

Synthesis of (4).

[0285]

To the suspension of NaH (7.2 g, 3.3 equiv, 60% in mineral oil) in THF (anhydrous, 500 mL) was added (3) (38.92 g, 121.6 mmol, 2.2 equiv). After the mixture was stirred for 30 min, 3-chloro-2-(chloromethyl)prop-1-ene (5.8 mL, 55.28 mmol), 15-crown-5 (0.2 mL), 16-crown-6 (200 mg) and KI (1.0 g) were added. The reaction mixture was heated to reflux for 16 h. After the temperature was cooled to room temperature ether (300 mL) was added, and the resulting solution was washed with water (150 mL) and brine (150 mL), dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo and the residue was purified by flash column chromatography (330 g of RediSep column, eluent: 0-70% EtOAc/Hexanes) to give (4) (33 g, 86%).

Synthesis of (5).

[0286]

To a solution of (4) (7.76 g, 11.2 mmol) in Acetone (100 mL) and water (10 mL), was added NMO (3.2 g, 27.3 mmol) and OsO4 (4% in H2O, 0.72 mL, 0.01 equiv). The resulting mixture was stirred overnight at room temperature. Acetone was removed in vacuo and EtOAc (200 mL) was added, washed with water (60 mL), 10% citric acid solution (100 mL), saturated NaHCO3 aqueous solution (100 mL) and brine (100 mL), dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo to give (5) (6.95 g, 85%).

Synthesis of (6).

[0287]

To a solution of (5) (3.74 g, 5.15 mmol) in DCM (40 mL), a solution of NaIO4 (3.25 g, 15.2 mol) in water (10 mL) was added, the resulting reaction mixture was stirred overnight at room temperature. The DCM layer was separated. The aqueous layer was extracted with DCM (40 mL). The combined DCM was dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo and the residue was purified by flash column chromatography (40 g of RediSep column, eluent: 20-100% EtOAc/Hexanes) to give (6) (1.85 g, 51%).

Synthesis of (7).

[0288]

To a solution of (6) (2.75 g, 3.96 mmol) in NH3/EtOH (2M, 15 mL) was added Ti(OiPr)4 (5.0 mL).

[0289]

The resulting solution was stirred for 6 h at room temperature, and NaBH4 (462 mg, 12.0 mmol) was added. The reaction mixture was stirred at room temperature overnight. An aqueous solution of NaOH (1M, 100 mL) was added. After 10 min stirring, DCM (3×150 mL) was used to extract. The combined DCM extract was washed with brine and dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo to give (7) (2.13 g, 77%).

Synthesis of (9).

[0290]

To a solution of (8) (50.2 g, 0.54 mol) in THF (700 mL) was added TEA (29 g, 0.28 mol) and (chloromethoxy)ethane (9.1 mL, 0.12 mol, 4.6 equiv). The reaction mixture was stirred overnight at room temperature. The reaction solution was transferred to a separation funnel and the THF layer was collected. The THF phase was washed with water and concentrated. The resulting residue was purified by flash column chromatography (220 g of column, eluent: 5-20% MeOH/DCM) to give (9) (9.2 g, 11%).

Synthesis of (10).

[0291]

To a solution of (9) (4.8 g, 32 mmol) in anhydrous THF (300 mL) was added NaH (3.83 g, 3.0 equiv, 60% in mineral oil). The mixture was stirred for 30 min, and the (Z)-octadec-9-en-1-yl methanesulfonate (33.2 g, 3.0 equiv, NU-CHEK PREP) was added. The reaction mixture was stirred overnight at room temperature. The reaction was quenched with water (20 mL), and the reaction solution was diluted with ether (300 mL). The organic phase was separated and washed with brine, dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo and the residue was purified by flash column chromatography (330 g of column, eluent: 0-100% EtOAc/Hexanes) to give (10) (9.8 g, 68%).

Synthesis of (11).

[0292]

To a solution of (10) (8.03 g) in DCM (10 mL) was added HCl in Methanol (4.6 M, 10 mL), the mixture was stirred for 6 h at room temperature, and then a solution of NaHCO3 (8 g) in water (100 mL) was added, DCM (2×120 mL) was used to extract, the combined organic phase was dried with sodium sulfate. After filtration, the organic solvent was evaporate in vacuo, and the residue was purified by flash column chromatography (220 g of gold column, eluent: 0-15% EtOAc/Hexanes) to give (11) (3.0 g, 41%).

Synthesis of (12).

[0293]

To a solution of (11) (4.39 g, 7.4 mmol) in DCM (20 mL) was added pyridine (1.6 mL, 3.0 equiv), followed by the addition of 4-nitrophenyl chloroformate (1.79 g, 8.88 mmol, 1.2 equiv). The reaction mixture was stirred for 4 h at room temperature. The solvents were evaporated in vacuo and the residue was purified by flash column chromatography (120 g of column, eluent: 0-100% EtOAc/Hexanes) to give (12) (5.21 g, 92%).

Synthesis of (13).

[0294]

To a solution of (12) (4.3 g, 5.67 mmol) in DCM (20 mL) was added (7) (3.38 g, 5.68 mmol) and TEA (3.0 mL). The reaction mixture was stirred for 3 days at room temperature. The solvents were evaporated in vacuo and the residue was purified by flash column chromatography (120 g of column, eluent: 5-100% EtOAc/Hexanes) to give (13) (4.29 g, 57%).

Synthesis of (14).

[0295]

A mixture of (13) (2.14 g) and HCl/MeOH (4.6 M, 20 mL) was stirred for 6 h at room temperature, the solvent was evaporated in vacuo. The methanol (2×50 mL) was added and evaporated, and the residue was purified by flash column chromatography (40 g of gold column, eluent: 0-50% MeOH/DCM) to give (14) (0.85 g, 45%).

Synthesis of (15).

[0296]

To a solution of SO3-DMF (2.25 g, 14.7 mmol, 20 equiv, Aldrich) in DMF (anhydrous, 5.0 mL), a solution of (14) (0.85 g, 0.74 mmol) in DMF (anhydrous, 5.0 mL) was added. The resulting solution was stirred for 2 h at room temperature. After the solution was cooled to 0° C., a solution of NaOAc (2.65 g, 32.3 mmol) in water (20 mL) was added. After stirring 20 min, the reaction solution was diluted with water (50 mL). The reaction solution was purified by flash column chromatography (120 g of C-18 column, eluent: 0-50% ACN/H2O) to give (15) as a white solid (1.02 g, with minor impurities. 68%).

Example 2. Synthesis of (22)

[0297]

[0298]

Intermediates (4) and (12) were made as generally described above in the synthesis of (15).

Synthesis of (16).

[0299]

A solution of (4) (13 g, 18.7 mmol) in DCM (75 mL) and MeOH (75 mL) was cooled to −78° C., and ozone was bubbled through. When the color of the solution turned to dark blue, oxygen was bubbled through until the solution became colorless, and then nitrogen was bubbled through for 15 min. NaBH4 (7.1 g, 191.8 mmol, 10 equiv) was added and the solution was brought to room temperature and stirred overnight. Water (150 mL) was added and DCM (2×150 mL) was used to extract. The combined DCM was dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo and the residue was purified by flash column chromatography (120 g of Redisep column, eluent: 20-100% EtOAc/Hexanes) to give (16) (12.94 g, 99%).

Synthesis of (17).

[0300]

To the suspension of NaH (1.77 g, 5.5 equiv, 60% in mineral oil) in THF (anhydrous, 150 mL), (16) (11.94 g, 17.1 mmol, 2.2 equiv) was added. After the mixture was stirred for 30 min, 3-chloro-2-(chloromethyl)prop-1-ene (5.8 mL, 55.28 mmol), 15-crown-5 (0.2 mL), 16-crown-6 (200 mg) and KI (0.5 g) were added. The reaction mixture was heated to reflux for 16 h. After the temperature was cooled to room temperature, ether (300 mL) was added, and the resulting solution was washed with water (150 mL) and brine (150 mL), dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo and the residue was purified by flash column chromatography (120 g of RediSep column, eluent: 20-1000% EtOAc/Hexanes) to give (17) (9.3 g, 37%).

Synthesis of (18).

[0301]

A solution of (17) (4.89 g) in DCM (25 mL) and MeOH (25 mL) was cooled to −78° C., and ozone was bubbled through. When the color of solution turned to dark blue, oxygen was bubbled through until the solution became colorless, and then nitrogen was bubbled through for 15 min. PPh3 (3.0 g, 11.4 mmol) was added and the solution was brought to room temperature and stirred overnight. The solvent was evaporated in vacuo and the residue was purified by flash column chromatography (80 g of Redisep column, eluent: 0-100% EtOAc/Hexanes) to give (18) (3.81 g, 78%).

Synthesis of (19).

[0302]

To a solution of (18) (3.81 g, 2.6 mmol) in NH3/EtOH (7N, 20 mL), Ti(OiPr)4 (6.2 mL) was added. The resulting solution was stirred for 6 h at room temperature, and NaBH4 (415 mg, 11.2 mmol) was added. The reaction mixture was stirred at room temperature overnight. The aqueous solution of NaOH (1M, 100 mL) was added. After 10 min stirring, DCM (3×150 mL) was used to extract. The combined DCM was washed with brine and dried with anhydrous sodium sulfate. After filtration, the solvent was evaporated in vacuo and to give (19) (3.65 g, 77%) which was used for next step without further purification.

Synthesis of (20).

[0303]

To a solution of (19) (3.65 g, 2.52 mmol, internal synthesis) in DCM (10 mL), (12) (1.91 g, 2.52 mmol, internal synthesis) and TEA (2.0 mL) were added. The reaction mixture was stirred for 3 days at room temperature. The solvents were evaporated in vacuo and the residue was purified by flash column chromatography (80 g of Redisep column, eluent: 0-100% EtOAc/Hexanes) to give (20) (2.97 g, 57%)

Synthesis of (21).

[0304]

The mixture of (20) (2.97 g) and HCl/MeOH (4.6 M, 30 mL) was stirred for 6 h at room temperature, the solvent was evaporated in vacuo. The methanol (3×30 mL) was added and evaporated in vacuo, and the residue was purified by flash column chromatography (40 g of Gold column, eluent: 0-100% MeOH/DCM) to give (21) (1.66 g, 66%).

Synthesis of (22).

[0305]

To a solution of SO3-DMF (5.81 g, 37.9 mmol, 40 equiv, Aldrich) in DMF (anhydrous, 15.0 mL), a solution of (21) (1.66 g, 0.95 mmol) in DMF (anhydrous, 15.0 mL) was added at 0° C. The resulting solution was stirred for 40 min at 0° C. and then continued to be stirred for 1 h at room temperature. The reaction solution was cooled with ice bath, EtOH (1.7 mL) was added and continued to be stirred for 30 min. A solution of NaOAc (6.0 g, 73.2 mmol) in water (100 mL) was added. After stirring for 1 h, the reaction solution was concentrated, and the residue was purified by flash column chromatography (120 g of C-18 column, eluent: 0-100% ACN/H2O) to give (22) as a white solid (2.08 g, 62%).

TFF Purification of (22).

[0306]

(22) (150 mg) was dissolved in 20 mL of water (HPLC grade), and the solution was filtered through a 0.2 μm VacuCap, rinsed with water, around 50 mL of (22) aqueous solution was transferred into a TFF reservoir. The solution was concentrated to approx. 40 mL with a 1K capsule. The compound solution was washed with 25 mM of NaCl aqueous solution (approx. 300 mL). The flow rate was 1.89 mL/min, then concentrated to approx. 40 mL. The conductivity of the permeate was 2.4 mS. Then the compound solution was washed with water (300 mL, HPLC grade), the filtrate conductivity is 0 μS, pH=5.55. The compound solution was collected and freeze-dried to give 130 mg white solid.

Example 3. Synthesis of (26)

[0307]

[0308]

Intermediates (12) and (7) were made as generally described above in the synthesis of (15).

Synthesis of (23).

[0309]

To a solution of (12) (0.82 g, 1.07 mmol) in DCM (8 mL), H2N-PEG-2000 (2.1 g, 0.976 mmol) was added, followed by the addition of TEA (2.0 mL). The mixture was stirred 3 days at room temperature. The solvents were evaporated in vacuo and the residue was purified by flash column chromatography (40 g of Redisep column, eluent: 0-10% MeOH/DCM) to give (23) as a white solid (2.44 g, 80%).

Synthesis of (24).

[0310]

To a solution of (23) (2.01 g, 0.725 mmol) in DMF (10 mL), HATU (0.413 g, 1.09 mmol) and TEA (0.5 mL) were added. After stirring 30 min, (7) (0.82 g) was added. The resulting reaction solution was stirred overnight at room temperature. The solvents were evaporated in vacuo and the residue was purified by flash column chromatography (40 g of Redisep column, eluent: 0-10% MeOH/DCM) to give (24) (2.32 g, 92%).

Synthesis of (25).

[0311]

The mixture of (24) (2.32 g, 0.69 mmol) and HCl/MeOH (7 N, 20 mL) was stirred for 6 h at room temperature, the solvent was evaporated in vacuo. The methanol (3×30 mL) was added and evaporated in vacuo, and the residue was purified by flash column chromatography (40 g of Gold column, eluent: 0-50% MeOH/DCM) to give (25) (0.21 g pure and 0.56 g with impurities).

Synthesis of (26).

[0312]

To a solution of SO3-DMF (0.82 g, 5.4 mmol, 8 equiv per —OH, Aldrich) in DMF (anhydrous, 5.0 mL), a solution of (25) (0.21 g, 0.21 mmol) in DMF (anhydrous, 5.0 mL) was added. The resulting solution was stirred for 2 h at room temperature. After the solution was cooled to 0° C., a solution of NaOAc (1.0 g) in MeOH (10 mL) was added. After stirring 1 h, the reaction solution was purified by flash column chromatography (80 g of C-18 column, eluent: 0-50% ACN/H2O) to give (26) as a white solid (30 mg, 15%).

[0313]

While a number of embodiments of this invention have been described, it is apparent that the basic examples may be altered to provide other embodiments that utilize the compounds, methods, and processes of this invention. Therefore, it will be appreciated that the scope of this invention is to be defined by the appended claims rather than by the specific embodiments that have been represented by way of example herein.



[0000]

Disclosed are dendritic anionic lipids which are compounds of Formula (I): wherein R and R1 are non-polar groups, L is a linking moiety, and Dm is a dendritic moiety of m generations, each as defined herein. These dendritic anionic lipids are useful for delivery and expression of m RNA and encoded protein, e.g., as a component of liposomal delivery vehicle, and accordingly can be useful for treating various diseases, disorders and conditions, such as those associated with deficiency of one or more proteins.

[0000]



1. A compound selected from the group consisting of:

2.-16. (canceled)

17. A composition comprising an mRNA encoding a protein, encapsulated within a liposome, wherein the liposome comprises one or more cationic lipids, one or more non-cationic lipids, one or more cholesterol-based lipids and one or more PEG-modified lipids, wherein at least one non-cationic lipid is the compound of claim 1.

18. The composition of claim 17, comprising an mRNA encoding for cystic fibrosis transmembrane conductance regulator (CFTR) protein.

19. The composition of claim 17, comprising an mRNA encoding for ornithine transcarbamylase (OTC) protein.

20. A composition comprising a nucleic acid encapsulated within a liposome, wherein the liposome comprises the compound of claim 1.

21. The composition of claim 20, further comprising one more lipids selected from the group consisting of one or more cationic lipids, one or more non-cationic lipids, and one or more PEG-modified lipids.

22. The composition of claim 20, wherein the nucleic acid is an mRNA encoding a peptide or polypeptide.

23. The composition of claim 22, wherein the mRNA encodes a peptide or polypeptide for use in the delivery to or treatment of the lung of a subject or a lung cell.

24. The composition of claim 23, wherein the mRNA encodes cystic fibrosis transmembrane conductance regulator (CFTR) protein.

25. The composition of claim 22, wherein the mRNA encodes a peptide or polypeptide for use in the delivery to or treatment of the liver of a subject or a liver cell.

26. The composition of claim 25, wherein the mRNA encodes ornithine transcarbamylase (OTC) protein.

27. The compound of claim 1, wherein said compound has the following structure:

28. The compound of claim 1, wherein said compound has the following structure:

29. The compound of claim 1, wherein said compound has the following structure: