24-04-2014 дата публикации
Номер: US20140113286A1
Methods and kits for assessing risk of metastasis in a cancer patient identified as having breast cancer, colon cancer or glioma use analysis of a classifier for CpG island methylator phenotype. 1. A method for assessing risk of metastasis in a cancer patient identified as having breast cancer , colon cancer or glioma , comprising the steps of:(a) obtaining a sample of tumor tissue from the patient;(b) evaluating the sample for hypermethylation of a plurality of genes, and(c) based on the evaluation of step (b) determining whether and/or to what extent the patient is at risk of cancer metastasis,wherein the plurality of genes includes at least three genes selected from the group consisting of: ALX4, CRABP1, ADAM23, MOXD1, CHST2, FAM89A, RNH1, B3GNT5, KCNIP1, SLC16A12, RUNX3, LYN, PSAT1, RASGRF2, SOX8, ARHGEF7, ADAM12, PYGO1, P2RY1, FLJ25477, FBN1, PROX1, FOXL2, KCNJ2, SMOC1, MCF2L2, BMP3, TRIM29, GRIK1, ALK, C2orf32, VIM, AKAP12, EIF5A2, DZIP1, FLJ34922, TMEM22, LBX1, GJA7, HAAO, KLK10, ZAR1, DPYSL5, SLIT2, RGS17, KIAA1822, PTGFR, FBN2, ST6GALNAC3, VAX1, GPR83, TBX2, SIX3, ACADL, and ASRGL1.2. The method of claim 1 , wherein the number of genes evaluated is from 3 to 20 genes selected from the group consisting of ALX4 claim 1 , CRABP1 claim 1 , ADAM23 claim 1 , MOXD1 claim 1 , CHST2 claim 1 , FAM89A claim 1 , RNH1 claim 1 , B3GNT5 claim 1 , KCNIP1 claim 1 , SLC16A12 claim 1 , RUNX3 claim 1 , LYN claim 1 , PSAT1 claim 1 , RASGRF2 claim 1 , SOX8 claim 1 , ARHGEF7 claim 1 , ADAM12 claim 1 , PYGO1 claim 1 , P2RY1 claim 1 , FLJ25477 claim 1 , FBN1 claim 1 , PROX1 claim 1 , FOXL2 claim 1 , KCNJ2 claim 1 , SMOC1 claim 1 , MCF2L2 claim 1 , BMP3 claim 1 , TRIM29 claim 1 , GRIK1 claim 1 , ALK claim 1 , C2orf32 claim 1 , VIM claim 1 , AKAP12 claim 1 , EIF5A2 claim 1 , DZIP1 claim 1 , FLJ34922 claim 1 , TMEM22 claim 1 , LBX1 claim 1 , GJA7 claim 1 , HAAO claim 1 , KLK10 claim 1 , ZAR1 claim 1 , DPYSL5 claim 1 , SLIT2 claim 1 , RGS17 claim 1 , KIAA1822 claim 1 , PTGFR claim 1 , ...
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